mgaleyuw
commented
6 months ago Hello Sanché --
The named CpG interval tracks were originally made using the hg38.fa reference fasta and UCSC's CpG island track (bed file). I used python to find the relative positions of each CpG dinucleotide for each of the CpG fasta sequences and then added those to the start positions of the region. I'll likely make that script available as a subcommand when I release an update to this tool, so that you can make custom regions work.
Best, Miranda
On Wed, Apr 3, 2024 at 8:30 AM Sanché Verbeeck @.***> wrote:
Hello
More of a general question: I was wondering how you made the files in the resources folder.
I'm a master student currently doing my thesis and those files would be really helpful for my pipeline, however I would like to make them myself.
Kind regards
Sanché verbeeck
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SanVerb
Hello
More of a general question: I was wondering how you made the files in the resources folder.
I'm a master student currently doing my thesis and those files would be really helpful for my pipeline. Howeverw I would like to make them myself; or at the very least understand how they were made.
Kind regards
Sanché verbeeck