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mgijax / mammalian-phenotype-ontology

Standard terms for annotating mammalian phenotypic data
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adenocarcinoma terms plus more #185

Closed obophenotype-user closed 9 years ago

obophenotype-user commented 15 years ago

  1. Please create a new parent term for "adenocarcinoma" under "carcinoma [MP:0002038]"

  2. Then place all existing adenocarcinoma subterms (gastric adenocarcinoma, intestinal adenocarcinoma, mammary adenocarcinoma, pancreatic ductal adenocarcinoma, prostate adenocarcinoma, and salivary adenocarcinoma) PLUS "lung adenocarcinoma [MP:0002027]" under new parent term adenocarcinoma

  3. Split "intestinal adenocarcinoma [MP:0002957]" into:

3a. small intestine adenocarcinoma DEF: malignant neoplasm of epithelial cells in the small intestine SYN: small intestinal adenocarcinoma FROM J:140639, J:26873, J:75047, J:144215, J:143082, J:20443, J:46242, J:94108, J:10209

3b. large intestine adenocarcinoma DEF: malignant neoplasm of epithelial cells in the large intestine SYN: large intestinal adenocarcinoma FROM J:142353, J:75047, J:24434, J:46242, J:94108, J:10209

  1. Create the following new terms as children of small intestine adenocarcinoma

4a. duodenum adenocarcinoma DEF: malignant neoplasm of epithelial cells in the duodenum SYN: duodenal adenocarconoma FROM J:20443

4b. jejunum adenocarcinoma DEF: malignant neoplasm of epithelial cells in the jejunum FROM J:20443

  1. Create the following new terms as children of large intestine adenocarcinoma

5a. cecum adenocarcinoma DEF: malignant neoplasm of epithelial cells in the cecum

5b. colon adenocarcinoma DEF: malignant neoplasm of epithelial cells in the colon SYN: colonic adenocarcinoma FROM J:142353, J:106572, J:49839, J:53510, J:102483, J:90217, J:125508, J:68476, J:24434, J:88094, J:51450, J:132357, J:20443, J:79668, J:25200, J:79668, J:143706, J:90337

5c. rectum adenocarcinoma DEF: malignant neoplasm of epithelial cells in the rectum SYN: rectal adenocarcinoma FROM J:142353, J:49839, J:68476

5d. anal adenocarcinoma DEF: malignant neoplasm of epithelial cells in the anal canal SYN: anal canal adenocarcinoma FROM J:142353

Thanks

Anna

Reported by: anna_anagnos

Original Ticket: "obo/mammalian-phenotype-requests/185":https://sourceforge.net/p/obo/mammalian-phenotype-requests/185

obophenotype-user commented 15 years ago

This has been done.

New terms added:

[Term] id: MP:0009308 name: adenocarcinoma def: "malignant neoplasm of epithelial cells in a glandular or glandular-like pattern" [ISBN:0-683-40008-8 "Stedman's Medical Dictionary, 27th edition"] synonym: "glandular cancer" EXACT [] synonym: "glandular carcinoma" EXACT [] is_a: MP:0002038 ! carcinoma

[Term] id: MP:0009309 name: small intestine adenocarcinoma def: "malignant neoplasm of epithelial cells in the small intestine" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "small intestinal adenocarcinoma" EXACT [] is_a: MP:0002957 ! intestinal adenocarcinoma

[Term] id: MP:0009310 name: large intestine adenocarcinoma def: "malignant neoplasm of epithelial cells in the large intestine" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "large intestinal adenocarcinoma" EXACT [] is_a: MP:0002957 ! intestinal adenocarcinoma

[Term] id: MP:0009311 name: duodenum adenocarcinoma def: "malignant neoplasm of epithelial cells in the duodenum" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "duodenal adenocarconoma" EXACT [] is_a: MP:0009309 ! small intestine adenocarcinoma

[Term] id: MP:0009312 name: jejunum adenocarcinoma def: "malignant neoplasm of epithelial cells in the jejunum" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: MP:0009309 ! small intestine adenocarcinoma

[Term] id: MP:0009313 name: cecum adenocarcinoma def: "malignant neoplasm of epithelial cells in the cecum" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] is_a: MP:0009310 ! large intestine adenocarcinoma

[Term] id: MP:0009314 name: colon adenocarcinoma def: "malignant neoplasm of epithelial cells in the colon" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "colonic adenocarcinoma" EXACT [] is_a: MP:0009310 ! large intestine adenocarcinoma

[Term] id: MP:0009315 name: rectum adenocarcinoma def: "malignant neoplasm of epithelial cells in the rectum" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "rectal adenocarcinoma" EXACT [] is_a: MP:0009310 ! large intestine adenocarcinoma

[Term] id: MP:0009316 name: anal adenocarcinoma def: "malignant neoplasm of epithelial cells in the anal canal" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"] synonym: "anal canal adenocarcinoma" EXACT [] is_a: MP:0009310 ! large intestine adenocarcinoma

Original comment by: cindyJax

obophenotype-user commented 15 years ago

Original comment by: cindyJax