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mgijax / mammalian-phenotype-ontology

Standard terms for annotating mammalian phenotypic data
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How to download specific (e.g. older) version of MP.owl? #3578

Closed moldach closed 2 years ago

moldach commented 2 years ago

The link that I've found to download the MP ontology in .owl format from EBI (https://www.ebi.ac.uk/ols/ontologies/mp) only provides the most-recent version of the ontology

I need a way to programatically chose which version of the ontology I download; however, I'm not sure where to find this...

The EBI website provides a non-functioning link: Version IRI: http://purl.obolibrary.org/obo/mp/releases/2022-04-08 which leads to a 400: Invalid request error.

Could you please let me know where I can get previous releases from?

cindyJax commented 2 years ago

https://github.com/mgijax/mammalian-phenotype-ontology/releases

From: "Matthew J. Oldach" @.> Reply-To: mgijax/mammalian-phenotype-ontology @.> Date: Thursday, April 28, 2022 at 1:41 PM To: mgijax/mammalian-phenotype-ontology @.> Cc: Subscribed @.> Subject: [EXTERNAL][mgijax/mammalian-phenotype-ontology] How to download specific (e.g. older) version of MP.owl? (Issue #3578)

The link that I've found to download the MP ontology in .owl format from EBI (https://www.ebi.ac.uk/ols/ontologies/mp) only provides the most-recent version of the ontology

I need a way to programatically chose which version of the ontology I download; however, I'm not sure where to find this...

The EBI website provides a non-functioning link: Version IRI: http://purl.obolibrary.org/obo/mp/releases/2022-04-08 which leads to a 400: Invalid request error.

Could you please let me know where I can get previous releases from?

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sbello commented 2 years ago

We have releases on GitHub. I think the link format https://github.com/mgijax/mammalian-phenotype-ontology/releases/download/v2022-04-06/mp.owl where you modify the vYear-month-day to the release you want should work.

I'll see if we can get the release purl to point to the correct spot.

matentzn commented 2 years ago

When this is merged: https://github.com/OBOFoundry/purl.obolibrary.org/pull/849

You can obtain every MP artefact from its version PURLs.. Surprising this was not noticed before!

http://purl.obolibrary.org/obo/mp/releases/2022-04-08/mp.obo

sbello commented 2 years ago

Thanks @matentzn The pull request Nico created has been merged so the purls should work now.

sbello commented 2 years ago

reopening as the links aren't working yet, will double check tomorrow

matentzn commented 2 years ago

Works for me:

http://purl.obolibrary.org/obo/mp/releases/2022-04-21/mp.obo

sbello commented 2 years ago

Odd the 2022-04-08 link above did not work but the 2022-04-21 link did And now checking the releases I see why, we have an 2022-04-06 release but not an 08 release. Reclosing.