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mgijax / mammalian-phenotype-ontology

Standard terms for annotating mammalian phenotypic data
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oval and round window child terms #3779

Closed sbello closed 1 year ago

sbello commented 1 year ago

for oval window we have only absent, consider adding increased/decreased size (J:220430) for round window we have absent and small but not large/increased size

anna-anagnostop commented 1 year ago

Added new terms:

decreased oval window size MP:0031491 DEF: less than average size of the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes SYN: decreased fenestra ovalis size SYN: small fenestra ovalis SYN: small oval window SYN: decreased vestibular window size SYN: small vestibular window SYN: reduced oval window size SYN: reduced vestibular window size SYN: small fenestra vestibuli

increased oval window size MP:0031492 DEF: greater than average size of the oval opening on the medial wall of the tympanic cavity leading into the vestibule, close to the foot of the stapes SYN: increased fenestra ovalis size SYN: enlarged oval window SYN: large oval window SYN: increased vestibular window size SYN: enlarged vestibular window SYN: large vestibular window SYN: large fenestra vestibuli SYN: enlarged fenestra vestibuli

increased round window size MP:0031493 DEF: greater than average size of the opening on the medial wall of the middle ear leading into the cochlea, closed in life by the secondary tympanic membrane; it serves to regulate fluid pressure in the inner ear SYN: increased fenestra cochleae size SYN: enlarged fenestra cochleae SYN: large fenestra cochleae SYN: increased fenestra rotunda size SYN: enlarged fenestra rotunda SYN: large fenestra rotunda SYN: increased cochlear window size SYN: enlarged round window SYN: large round window SYN: enlarged cochlear window SYN: large cochlear window

Also, changed primary term label for small round window MP:0030411 to decreased round window size (for consistency)

sbello commented 1 year ago

I see this term in the MP file but for some reason it did not make it into the file in MGI. Reopening until I figure out what happened.

Checked the mp.obo file and the ID is present (MP:0031493)

anna-anagnostop commented 1 year ago

Sue, regarding increased round window size MP:0031493, I had erroneously inserted my ORCID # under has_obo_namespace. Changed that to MPheno.ontology. Let's see if this change rectifies the issue.

sbello commented 1 year ago

Going to do a new build and release today to push to MGI. I think removing the namespace will fix it.

anna-anagnostop commented 1 year ago

@sbello: FYI, I checked on production 8/1/2023 and found increased round window size MP:0031493 in the PWI. Looks this issue is now resolved.