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mgijax / mammalian-phenotype-ontology

Standard terms for annotating mammalian phenotypic data
Creative Commons Attribution 4.0 International
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subdivide abnormal feces composition MP:0003868 #3997

Open sbello opened 3 months ago

sbello commented 3 months ago

abnormal feces composition MP:0003868 has only 2 child terms and many direct annotations, review the annotations to create new child terms

abnormal/increased/decreased feces lipid content - J:344868 - increase in free fatty acids existing term steatorrhea would fall under this

sbello commented 3 months ago

Added terms for lipids, cholesterol, bile salts and water content Leaving this open until we make a decision about steatorrhea #3998

sbello commented 3 months ago

the ELK reasoner puts abnormal feces water content under abnormal body water content but I don't think this is correct so I did not add the parent

anna-anagnostop commented 3 months ago

Also, how does diarrhea MP:0005036 (under 'abnormal defecation', CHECK EQ) relate to the new term increased feces water content MP:0014483 ?

Compare wih HPO term Diarrhea HP:0002014 which uses the same EQ as the MP term but has addtional child terms.

sbello commented 3 months ago

I've made diarrhea a child of increased feces water content, I wouldn't cal these the same since you may have more water than normal but not be fully diarrhea. But diarrhea clearly has as part an increase in water content.

We should discuss with Leigh the placement of 'melana' MP has this under feces composition but HPO has it under diarrhea