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mgijax / mammalian-phenotype-ontology

Standard terms for annotating mammalian phenotypic data
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reorganize cerebellum and subterms #542

Open obophenotype-user opened 14 years ago

obophenotype-user commented 14 years ago

the existing structure is wrong and the subdivisions should be better described and organized.

Reported by: cindyJax

Original Ticket: obo/mammalian-phenotype-requests/542

obophenotype-user commented 14 years ago

cerebellum gross regions

Original comment by: cindyJax

obophenotype-user commented 14 years ago

good description in : "The cerebellum". in Kandel ER, Schwartz JH. Principles of Neural Science, 3rd edition. New York: Elsevier. pp626-646

see also: http://en.wikipedia.org/wiki/Cerebellum

Original comment by: cindyJax

obophenotype-user commented 14 years ago

Original comment by: cindyJax

obophenotype-user commented 14 years ago

Apps R, Hawkes R. Cerebellar cortical organization: a one-map hypothesis. Nat Rev Neurosci. 2009 Sep;10(9):670-81. Review. PubMed PMID: 19693030.

review of rat vs human gross anatomy of the cerebellum some mouse gross anatomy, transverse stripes

Original comment by: cindyJax

obophenotype-user commented 14 years ago

1: Sillitoe RV, Joyner AL. Morphology, molecular codes, and circuitry produce the three-dimensional complexity of the cerebellum. Annu Rev Cell Dev Biol. 2007;23:549-77. Review. PubMed PMID: 17506688.

2: Cerebellum morphogenesis: the foliation pattern is orchestrated by multi-cellular anchoring centers. Sudarov A, Joyner AL. Neural Dev. 2007 Dec 3;2:26.PMID: 18053187

Original comment by: cindyJax

obophenotype-user commented 14 years ago

Reference for the morphology of the cerebellar hemispheres.

Acta Morphol Neerl Scand. 1979 Feb;17(1):33-52. The morphology of the mouse cerebellum.

Marani E, Voogd J.

In this description of the morphology of the mouse cerebellum, the main landmarks for subdivision were the discontinuities of the cortical sheet. In certain cerebellar sulci in the posterior lobe, the cortex is absent. Within the paramedian sulcus the cortex is interrupted rostral and caudal to the copula pyramidis. Rostrally, this discontinuity between vermis and hemisphere occupies a position corresponding to the intercrural sulcus of the ansiform lobule of other mammals. A subdivision into the simple lobule (VI and HVI), ansiform and paramedian lobule (HVII) and vermal lobule VII is proposed for this region, which accounts for the position of this cortexless area in the intercrural sulcus. Caudal to the copula pyramidis is the cortex is interrupted at the bottom of the paramedian sulcus between lobules X, IX and caudal VIII medially, and the paraflocculus and flocculus laterally. In most mammals, this area, devoid of cortex, extends much farther in the interparafloccular sulcus between the dorsal paraflocculus and the flocculus with the ventral paraflocculus. From the medullary surface of the cerebellar peduncles an area without cortex extends in between the ansiform lobule and the paraflocculus onto the copula pyramidis and the paramedian lobule. The nomenclature of the distal, foliated part of the paraflocculus in mouse, rat and rabbit is discussed.

PMID: 452954 [PubMed - indexed for MEDLINE]

Original comment by: cindyJax