Handle all CIGAR cases.

mgymrek / pybamview

Browser based application for viewing bam alignments

MIT License

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Handle all CIGAR cases. #3

Closed mgymrek closed 10 years ago

mgymrek commented 10 years ago

Currently only I/M/D are handled

trickytank commented 10 years ago

Is this what causes this error from hard-clipped bases (H)? TypeError: 'NoneType' object is not iterable

mgymrek commented 10 years ago

It's possible. Could you copy the traceback from the error message here? I am currently working on this issue.

mgymrek commented 10 years ago

I have implemented all cigar options and added test cases for them in this commit . closing this issue. If you are still having problems you can open a new issue or email me with more details about the error.