I would like to build small RNA libraries (mmf, hmf, mtf, ptf, snortf, ncorf, agff) for a new species to analyze them with CODA [https://github.com/marta-nazzari/CODA]. If I understand your miRge3_build instructions correctly [https://github.com/mhalushka/miRge3_build], then I would simply install the miRge-build script and then run the script with the genome (FASTA) and the genome-repeats (GTF) file and the script should generate the above small files?
I would like to build small RNA libraries (mmf, hmf, mtf, ptf, snortf, ncorf, agff) for a new species to analyze them with CODA [https://github.com/marta-nazzari/CODA]. If I understand your miRge3_build instructions correctly [https://github.com/mhalushka/miRge3_build], then I would simply install the miRge-build script and then run the script with the genome (FASTA) and the genome-repeats (GTF) file and the script should generate the above small files?
Is this correct?