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mhammell-laboratory / TElocal

A package for quantifying transposable elements at a locus level for RNAseq datasets.
GNU General Public License v3.0
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TElocal for transcript information? #35

Closed sanhe374 closed 5 months ago

sanhe374 commented 5 months ago

I have been using TEcount for estimating TEs in total RNA-seq data which has worked great. However, I want to combine this with methylation data and there we have methylation differences at the transcript level. Would running TElocal give me the transcript information for TEs and genes?

olivertam commented 5 months ago

Hi,

Thank you for your interest in the software. TElocal will give you transcript information for TE (i.e. counts for each genomic copy), but will quantify genes the same way as TEcount. Hope this answers your question.

Thanks.

sanhe374 commented 5 months ago

Thank you, where can I download the compressed tarball for TElocal?

olivertam commented 5 months ago

Hi,

The latest release is here You can also clone the repository with git.

Thanks

sanhe374 commented 5 months ago

Thank you