TESmall Could not retrieve index issue

mhammell-laboratory / TEsmall

A pipeline for profiling TE-derived small RNAs

GNU General Public License v3.0

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Closed sanatbhadsavle closed 2 years ago

sanatbhadsavle commented 2 years ago

[E::idx_find_and_load] Could not retrieve index file for 'Control.multi.bam'

I get this message when running TESmall on my files. 'Control' being the label name I chose using option -l

olivertam commented 2 years ago

Hi,

This is a known quirk of the pysam module (see here). It does not appear to affect the running of TEsmall.

Thanks.