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mhammell-laboratory / TEtranscripts

A package for including transposable elements in differential enrichment analysis of sequencing datasets.
http://hammelllab.labsites.cshl.edu/software/#TEtranscripts
GNU General Public License v3.0
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.gitignore, workflows, and docker containers oh my! #115

Closed molikd closed 2 years ago

molikd commented 2 years ago

This pull request does three things:

  1. adds a more robust .gitignore
  2. adds a workflow for making TEtoolkit docker containers (and singularity containers by proxy)
  3. adds a whitespace and a stale github workflow

in order for this to work the following secrets would need to be added to the repo:

secrets.GITHUB_TOKEN secrets.DOCKER_USERNAME secrets.DOCKER_PASSWORD

This would necessitate a dockerhub account: https://hub.docker.com/

The account name from the dockerhub account would need to be added to manual-docker-TEtranscripts.yml; I recommend editing this pull request with the dockerhub userid in manual-docker-TEtranscripts.yml before accepting the pull quest