FTP APGv4 TE GTF - Missing semi-colon in attributes field

mhammell-laboratory / TEtranscripts

A package for including transposable elements in differential enrichment analysis of sequencing datasets.

http://hammelllab.labsites.cshl.edu/software/#TEtranscripts

GNU General Public License v3.0

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FTP APGv4 TE GTF - Missing semi-colon in attributes field #23

Closed PriceJon closed 6 years ago

PriceJon commented 6 years ago

The attribute field of the ZmAGPv4_TE.gtf file on the FTP site is a semi-colon on each line before the family_id argument. This causes an error when reading in the file.

1 LTRharvest exon 10263 15666 . + . gene_id "RLG00027B73v400064"; transcript_id "RLG00027B73v400064" family_id "RLG00027B73v400064"; class_id "LTR";

olivertam commented 6 years ago

Thank you for pointing out the error. This should now be fixed, and the new file should be on our FTP site. Please let us know if you encounter other issues. Thanks again.

PriceJon commented 6 years ago

No problem. Testing now but the program is nice, thanks.