mheinzinger ProstT5 issues

mheinzinger / ProstT5

Bilingual Language Model for Protein Sequence and Structure

MIT License

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issues

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Readme update: model.full() - AttributeError: 'T5EncoderModel' object has no attribute 'full'

#35 robsyc opened 1 week ago
0
Foldseek annotation of predicted 3Di structure gives no results

#34 Jigyasa3 opened 2 weeks ago
1
PDB data link Error

#33 zj-liu opened 1 month ago
0
Training ProstT5 MLM to predict full sequence or labels

#32 BSharmi opened 2 months ago
1
ProstT5-encoder + CNN model training scripts

#31 rakeshr10 opened 2 months ago
1
Strange results for AA2fold translation

#30 CalvinRusley opened 3 months ago
3
ProstT5 Using all available threads at inference with cpus

#29 gbouras13 closed 1 week ago
0
Limit AA alphabet when generating from 3Di rep

#28 neuwirtter opened 3 months ago
1
translate.py with default settings generates long stretch of simple repeats

#27 yzhang-github-pub opened 4 months ago
1
Entry error between aa and 3di string

#26 rakeshr10 opened 4 months ago
3
Sequence conservation model described in the paper

#25 rakeshr10 opened 4 months ago
2
Probability cutoff?

#24 mauriciolangleib opened 4 months ago
6
How well does this scale with length of amino acids?

#23 Andy-B-123 opened 5 months ago
1
computing residue logits from 3Di input

#22 adrienchaton closed 4 months ago
5
Problem while trying to convert AA to 3Diaa

#21 mauriciolangleib closed 5 months ago
2
fixing typos

#20 vicvaleeva closed 5 months ago
1
Fixing typos

#19 vicvaleeva closed 5 months ago
0
Update README.md

#18 vicvaleeva closed 5 months ago
0
'T5Tokenizer' object has no attribute 'to'

#17 aidenkoloj opened 5 months ago
1
add link to zenodo for model backup

#16 gbouras13 closed 5 months ago
0
Foldseek not liking generate_foldseek_db.py output TSVs

#15 martinez-zacharya closed 6 months ago
6
add Apple Silicon support

#14 gbouras13 closed 7 months ago
1
Translation result is unexpected！

#13 darkcorvushhh closed 5 months ago
1
Protein sequence length limit

#12 rakeshr10 closed 5 months ago
1
add LoRA finetune script

#11 gbouras13 closed 9 months ago
1
Issue downloading model weights

#10 szimmerman92 closed 8 months ago
1
Update predict_3Di_encoderOnly.py

#9 pskvins closed 9 months ago
7
ProstT5 for tasks like AMP classification or protein localization. Also protT5 xxl results.

#8 IliasGewr closed 8 months ago
1
Back Translate 3Di Tokesn to PDB Format

#7 mahdip72 closed 10 months ago
1
AttributeError: 'T5EncoderModel' object has no attribute 'full'

#6 szimmerman92 closed 10 months ago
4
translate.py documentation

#5 lhallee closed 11 months ago
1
Base Roundtrip Accuracy

#4 lhallee closed 11 months ago
7
Converting the AA sequences to 3Di and getting the output in PDB format for Foldseek input?

#3 Jigyasa3 closed 8 months ago
4
Dataset version with IDs?

#2 lhallee closed 1 year ago
11
Add script for generation of Foldseek databases from amino-acid sequences and 3Di strings

#1 kWeissenow closed 1 year ago
0