QQ plot bug - Githubissues

quentin67100 commented 5 years ago

When i want to use the QQ.R there are an error :

Rscript /Users/quentinchartreux/Downloads/TRAPD-master-2/code/QQ.R --pvalfile /Users/quentinchartreux/Documents/StageM2/burden.txt --plotfile out.png Error in file(file, "rt") : impossible d'ouvrir la connexion Calls: read.delim -> read.table -> file De plus : Warning message: In file(file, "rt") : impossible d'ouvrir le fichier 'burden.txt' : No such file or directory

can you help me please ?

mhguo1 commented 5 years ago

Hi, apologies for the delayed response. Does your file "/Users/quentinchartreux/Documents/StageM2/burden.txt" exist? It seems that the issue is that R can't find that file path to read.

quentin67100 commented 5 years ago

Hi,

Yes this file exist i copied the path directly from the file, and I also test to work directly on my macbook or on a server and I have the same issue

De : mhguo1 notifications@github.com Répondre à : mhguo1/TRAPD reply@reply.github.com Date : mardi 11 juin 2019 à 19:08 À : mhguo1/TRAPD TRAPD@noreply.github.com Cc : Quentin CHARTREUX chartreq@igbmc.fr, Author author@noreply.github.com Objet : Re: [mhguo1/TRAPD] QQ plot bug (#5)

Hi, apologies for the delayed response. Does your file "/Users/quentinchartreux/Documents/StageM2/burden.txt" exist? It seems that the issue is that R can't find that file path to read.

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mhguo1 commented 5 years ago

Hi Quentin, I have found the bug and fixed it. Thank you for noting this!

mhguo1 / TRAPD

QQ plot bug #5