This update subtly modifies the way that --standalone-taxonomy works. It now no longer requires a zotu table, though it will accept one if you provide it.
The taxonomy table (sans zotu abundances) will now end up in output/standalone_taxonomy/lca/<settings>
If you provide a zotu table, it will be merged with the LCA output and put in output/standalone_taxonomy/final
This update subtly modifies the way that
--standalone-taxonomyworks. It now no longer requires a zotu table, though it will accept one if you provide it.The taxonomy table (sans zotu abundances) will now end up in
output/standalone_taxonomy/lca/<settings>If you provide a zotu table, it will be merged with the LCA output and put inoutput/standalone_taxonomy/finalresolves #113 resolves #109