Scoping issues with groovy variables were messing with nextflow's process caching. In this update, all groovy variables are now strictly defined with def, which fixes the resume problem. resolves #120, resolves #121.
Additionally, the NCBI taxonomy wasn't properly being downloaded if the pipeline was run with --insect but not --blast, and that is fixed. resolves #122
Scoping issues with groovy variables were messing with nextflow's process caching. In this update, all groovy variables are now strictly defined with
def, which fixes the resume problem. resolves #120, resolves #121.Additionally, the NCBI taxonomy wasn't properly being downloaded if the pipeline was run with
--insectbut not--blast, and that is fixed. resolves #122