The new R-based taxonomy collapser gets the NCBI ranked lineage file independently. To allow the old way to still be supported, we just added that lineage in as a dependency for the process, but really we should allow it to use that dependency rather than download the whole dang thing every time it's run.
mhoban
commented
11 months ago
The new R-based taxonomy collapser gets the NCBI ranked lineage file independently. To allow the old way to still be supported, we just added that lineage in as a dependency for the process, but really we should allow it to use that dependency rather than download the whole dang thing every time it's run.