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mhoban / rainbow_bridge

GNU General Public License v3.0
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Detect whether there are multiple reads and suggest --illumina-demultiplexed option #7

Closed mhoban closed 8 months ago

mhoban commented 1 year ago

The pipeline will happily run across multiple individual files, thinking that they're each entire sequencing runs. Somehow we should know if there are multiple reads and give a warning saying that the --illumina-demultiplexed option is probably needed.

mhoban commented 8 months ago

The way that channels work in nextflow probably makes this difficult if not impossible as the pipeline is currently structured.

mhoban commented 8 months ago

Gonna close this for now. Maybe it'll become relevant again later on.