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mhoban / rainbow_bridge

GNU General Public License v3.0
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Fix taxonomy assignment so it can use lulu OR regular output #8

Closed mhoban closed 1 year ago

mhoban commented 1 year ago

Right now assign_collapse_taxonomy (or whatever it's called) uses both the raw zotus and the lulu-curated zotus. This obvs causes problems if the user has chosen to --skip-lulu.

Redo this process to use whatever is there, perhaps moving it into a module and running it independently, if that makes sense.

mhoban commented 1 year ago

Fixed. As suggested, the taxonomy assignment step was moved into a module and run independently for curated and non-curated zotus.