Reads don't always end with .fastq or .fastq.gz, yet the pipeline assumes they mostly always will. In lieu of requiring users to change their filenames, the pipeline should support arbitrary file extensions (or at the very least .fq).
It was suggested in #81 that extensions could be extracted from the reads using map right after the reads channel is created.
Reads don't always end with .fastq or .fastq.gz, yet the pipeline assumes they mostly always will. In lieu of requiring users to change their filenames, the pipeline should support arbitrary file extensions (or at the very least .fq).
It was suggested in #81 that extensions could be extracted from the reads using
mapright after the reads channel is created.