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mhorlbeck / ScreenProcessing

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Where is the normalization for growth value in codes? #33

Open abearab opened 7 months ago

abearab commented 7 months ago

https://github.com/GilbertLabUCSF/ScreenPro2/issues/24

@mhorlbeck I'm trying to understand how you are doing population doubling normalization in action. I see you define growthValueTuples but I couldn't find where you are using it. Can you please tell me where is the actual code that you are doing this? I'm confused about the growth rate in rho score calculation. I tried something here based on my understanding from the figure but I would like to comparing with your script. Thanks for your help.

image

abearab commented 2 days ago

Here there is a note about martin's parse_growthdata.py code: https://github.com/mhorlbeck/ScreenProcessing/blob/0ee5192ecc17348665bd1387ddfa9037efb7964f/process_experiments.py#L605

Is there any chance to get access to that code?