search

miRTop / mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming
https://mirtop.readthedocs.org
MIT License
18 stars 21 forks source link

Function to check GFF #13

Open lpantano opened 6 years ago

lpantano commented 6 years ago

Check minimum attributes are there, show possible others to add. Code should be inside gff/check.py

Here there are multiple examples:

https://github.com/miRTop/mirtop/blob/dev/data/examples/gff/*gff

correct_file.gff should give no warnings, the rest has something wrong.

The definition of the format is here:

https://github.com/miRTop/incubator/blob/master/format/definition.md