Closed lpantano closed 6 years ago
Allow GFF as an input in gff subcommand:
gff
https://github.com/miRTop/mirtop/blob/dev/mirtop/gff/__init__.py#L25
And create the function to read the file. It should return a list being each line (not the header):
hsa-let-7a-1 miRBase21 isomiR 4 26 0 + . Read hsa-let-7a-5p.sA.t.ATGAGGTAGTAGGTTGTATAGT; UID bhJJ5WJL2; Name hsa-let-7a-5p; Parent hsa-let-7a-1; Variant iso_5p:+1,iso_3p:-1; Cigar 22M; Expression 11; Filter Pass; Hits 1;
an element like:
[column9-UID, column1, COLDATA-header, column9-Expression, $line]
Allow GFF as an input in
gffsubcommand:https://github.com/miRTop/mirtop/blob/dev/mirtop/gff/__init__.py#L25
And create the function to read the file. It should return a list being each line (not the header):
an element like: