Add test units for import custom tools format - Githubissues

miRTop / mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming

https://mirtop.readthedocs.org

MIT License

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Add test units for import custom tools format #32

Closed lpantano closed 4 years ago

lpantano commented 6 years ago

There are some tools already done here: https://github.com/miRTop/mirtop/blob/dev/test/test_automated_analysis.py#L122

We need to add for the others tools as well (test inputs are linked below)

isomir-SEA: https://github.com/miRTop/mirtop/tree/dev/data/examples/isomir-sea
PROST: https://github.com/miRTop/mirtop/tree/dev/data/examples/prost *sRNAbench: https://github.com/miRTop/mirtop/tree/dev/data/examples/srnabench