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miRTop / mirtop

command lines tool to annotate miRNAs with a standard mirna/isomir naming
https://mirtop.readthedocs.org
MIT License
18 stars 21 forks source link

analyze human mirbase data as an example #5

Open lpantano opened 7 years ago

lpantano commented 7 years ago

take the file experiments.txt.gz from ftp://mirbase.org/pub/mirbase/CURRENT/database_files/ and get all the IDs from human, then use bcbio-nextgen to analyze the full data set. Make a database with this output and a viz tool maybe with shiny to inspect the data?