Closed lpantano closed 6 years ago
Introduce a test unit to read the example GTF file at here: https://github.com/miRTop/mirtop/blob/dev/data/aligments/let7-perfect.bam
The output should be a nested dict like the following:
dict
Initial function already implemented here: https://github.com/miRTop/mirtop/blob/dev/mirtop/bam/bam.py#L34
The unit test should be included here: https://github.com/miRTop/mirtop/blob/dev/test/test_functions.py#L22
extra: this line should be optional: https://github.com/miRTop/mirtop/blob/dev/mirtop/bam/bam.py#L65. Need a parameter in the command line to turn it on and off.
Introduce a test unit to read the example GTF file at here: https://github.com/miRTop/mirtop/blob/dev/data/aligments/let7-perfect.bam
The output should be a nested
dict
like the following:Initial function already implemented here:
https://github.com/miRTop/mirtop/blob/dev/mirtop/bam/bam.py#L34
The unit test should be included here: https://github.com/miRTop/mirtop/blob/dev/test/test_functions.py#L22
extra: this line should be optional: https://github.com/miRTop/mirtop/blob/dev/mirtop/bam/bam.py#L65. Need a parameter in the command line to turn it on and off.