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micahvista / VACmap

VACmap: a long-read aligner specifically designed for complex structural variation discovery
GNU General Public License v3.0
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No module named 'edlib' #4

Open dukecomeback opened 3 months ago

dukecomeback commented 3 months ago

/miniconda3/envs/busco/bin/vacmap:4: DeprecationWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html import('pkg_resources').run_script('VACmap==1.0', 'vacmap') Traceback (most recent call last): File "/home/k_d239/miniconda3/envs/busco/bin/vacmap", line 4, in import('pkg_resources').run_script('VACmap==1.0', 'vacmap') File "/home/k_d239/miniconda3/envs/busco/lib/python3.9/site-packages/pkg_resources/init.py", line 680, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/k_d239/miniconda3/envs/busco/lib/python3.9/site-packages/pkg_resources/init.py", line 1516, in run_script exec(code, namespace, namespace) File "/mmfs1/home/k_d239/miniconda3/envs/busco/lib/python3.9/site-packages/VACmap-1.0-py3.9-linux-x86_64.egg/EGG-INFO/scripts/vacmap", line 9, in import edlib ModuleNotFoundError: No module named 'edlib'

Hi, I got the above error after the installation. Is there a simple way to fix this? Thank you.

micahvista commented 3 months ago

Hi,

I apologize for the inconvenience. It seems there might have been an error due to an unsuccessful installation. Could you please try reinstalling VACmap as recommended? Alternatively, you can run the command pip install edlib. （Maybe introduce another errors)

Best regards, Hongyu Ding