Open btpearse opened 3 years ago
I've noticed that sometimes it does that, and I'm not sure what the issue is. Try to copy/paste the command out into a new anaconda command line and see if that works.
I may need some guidance for how to do that. This is what I tried:
I imagine there's a better way of doing it because this didn't work for me!
Sure, it's not a line of python, it's just a command (like the jupyter notebook .
command). So you can just copy it into the anaconda prompt - nothing else should be required. If that doesn't work, post your command and the output here; maybe there's something going wrong with the command itself.
Here's the example for the Batch Processing notebook running:
c:\exiftool\exiftool.exe -csv="C:\Users\justi\Downloads\RedEdgeImageSet\0000SET\..\stacks\log.csv" -overwrite_original C:\Users\justi\Downloads\RedEdgeImageSet\0000SET\..\stacks
The output is just the number of files found/updated.
Interesting, I run it and only one of my tifs is updated. I run it again and another tif gets updated.
This is my command:
C:\exiftool\exiftool.exe -csv="E:\0006SET\stacks\log.csv" -overwrite_original E:\0006SET\stacks
The output is this long list:
That seems to be telling us that there's a disconnect between the files in the directory, and the paths in the log.csv file. If the filenames between the two don't match those messages will show up.
Ok well at least I have the command running now. I will have to do some troubleshooting to see why my file names aren't matching up. Thanks for your help on this!
Hi; this is related. I'm also running the batch processing tutorial, and I get a "No such file or directory" error when I try to run the exiftool -csv line from a Jupyter notebook (running on a Mac). After trying for 4 hours to forensically investigate this problem (because I'm new to exif), I have determined that it's a problem with Jupyter and not exiftool: I know this because I just successfully updated the metadata for all 355 tiffs in the "stacks" folder using the terminal.
Does anyone have any idea what's causing this strange behavior in Jupyter?
Thanks!
FileNotFoundError Traceback (most recent call last)
/var/folders/qt/3lb1lh3x7yz_v0g5s0mnj8xr0000gp/T/ipykernel_69228/2051487202.py in
~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in check_call(*popenargs, *kwargs) 356 check_call(["ls", "-l"]) 357 """ --> 358 retcode = call(popenargs, **kwargs) 359 if retcode: 360 cmd = kwargs.get("args")
~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in call(timeout, *popenargs, *kwargs) 337 retcode = call(["ls", "-l"]) 338 """ --> 339 with Popen(popenargs, **kwargs) as p: 340 try: 341 return p.wait(timeout=timeout)
~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in init(self, args, bufsize, executable, stdin, stdout, stderr, preexec_fn, close_fds, shell, cwd, env, universal_newlines, startupinfo, creationflags, restore_signals, start_new_session, pass_fds, encoding, errors, text) 798 c2pread, c2pwrite, 799 errread, errwrite, --> 800 restore_signals, start_new_session) 801 except: 802 # Cleanup if the child failed starting.
~/mambaforge/envs/micasense/lib/python3.7/subprocess.py in _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, start_new_session) 1549 if errno_num == errno.ENOENT: 1550 err_msg += ': ' + repr(err_filename) -> 1551 raise child_exception_type(errno_num, err_msg, err_filename) 1552 raise child_exception_type(err_msg) 1553
FileNotFoundError: [Errno 2] No such file or directory: 'exiftool -csv="~/RedEdgeImageSet/stacks/log.csv" "~/imageprocessing/RedEdgeImageSet/stacks/"': 'exiftool -csv="~/imageprocessing/RedEdgeImageSet/stacks/log.csv" "~/imageprocessing/RedEdgeImageSet/stacks/" '
I'm stuck on the last step of the Batch Processing notebook at the "Use Exiftool from the command line to write metadata to images". When I run the code it doesn't seem to change anything in my tif files.
I found a similar issue here: https://github.com/micasense/imageprocessing/issues/121, but it looks like it never got solved.
I run the following code and get an output of 0
Very new to this stuff so appreciate the help.