michabirklbauer internal_ions issues

michabirklbauer / internal_ions

https://internal-ions.vercel.app/

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issues

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Add ruler for threshold of identification score in 2nd tab

#57 veitveit opened 5 days ago
0
Option to download figures or generate report

#56 michabirklbauer opened 3 weeks ago
0
Cannot go back to manual input in the Fraggraph tab

#55 louisebuur opened 1 month ago
1
fix #47

#54 michabirklbauer closed 1 month ago
0
Advanced filtering options

#53 michabirklbauer closed 1 month ago
0
fix for #51

#52 michabirklbauer closed 1 month ago
0
Error for large fragment-centric table

#51 veitveit closed 1 month ago
3
Add charge state to spectrum-centric table

#50 veitveit opened 3 months ago
1
Filtering options for spectrum-centric and fragment-centric views

#49 veitveit closed 1 month ago
3
Duplicated spectra in spectrum-centric dataframe

#48 veitveit opened 3 months ago
3
Reading MaxQuant files fail

#47 louisebuur closed 1 month ago
0
Running fragment explorer with ProteomeTools files fails

#46 louisebuur closed 1 month ago
4
fix mail links

#45 michabirklbauer closed 3 months ago
0
fix for #42

#44 michabirklbauer closed 3 months ago
0
Handle missing intensity values for precursors

#43 michabirklbauer closed 3 months ago
1
Wrong session_state key check that may lead to possibly not initialized consensus spectrum

#42 michabirklbauer closed 3 months ago
0
Allow all identification file formats

#41 michabirklbauer closed 3 months ago
0
Error reading mgf file

#40 veitveit closed 3 months ago
4
Add MaxQuant input (PSMs)

#39 veitveit closed 3 months ago
0
Cleanup orphaned code

#38 michabirklbauer closed 4 months ago
0
Issue #32 and #26

#37 arthur-grimaud closed 5 months ago
0
figure text, plot margins etc. #4

#36 carolinelennartsson closed 5 months ago
0
fix for #29 (Filter options in Tab2)

#35 michabirklbauer closed 5 months ago
0
Use cases for showing the power of internal ions

#34 veitveit opened 6 months ago
6
Find suitable example data

#33 veitveit opened 6 months ago
0
Merge tabs 3 and 4 ?

#32 arthur-grimaud closed 5 months ago
0
[spectra] Visualise ion types

#31 carolinelennartsson opened 6 months ago
0
Seperate documentation tab

#30 carolinelennartsson opened 6 months ago
4
Filter selection in Tab 2

#29 michabirklbauer closed 5 months ago
0
Moved common parameters to the sidebar

#28 michabirklbauer closed 6 months ago
0
[Fraggraph] Comparison of peptidoforms with less/more than two modifications

#27 michabirklbauer opened 6 months ago
0
Parsing of parameters for fraggraph instead of fragmentation dropdown

#26 michabirklbauer closed 5 months ago
1
Implementation of site determining plots, fixes for #18, #19, #21 and #22

#25 michabirklbauer closed 6 months ago
1
Common parameters in the sidebar

#24 michabirklbauer closed 6 months ago
1
Merging of spectra in Tab 3 ?

#23 arthur-grimaud closed 6 months ago
1
[Fraggraph] Missing functions in frag_graph_report.py

#22 michabirklbauer closed 6 months ago
2
Max isotope and max charge filtering

#21 michabirklbauer closed 6 months ago
1
Fragannot results

#20 michabirklbauer closed 1 month ago
2
Parsing modification positions of peptidoform

#19 michabirklbauer closed 6 months ago
4
[Fraggraph] ms-level information not available in MGF

#18 michabirklbauer closed 6 months ago
3
mzML support?

#17 michabirklbauer opened 7 months ago
2
updates

#16 michabirklbauer closed 7 months ago
0
[MERGE AFTER #14] Integration of FragGraph into Tab4

#15 michabirklbauer closed 7 months ago
1
[MERGE AFTER #11] Add spectrum filtering functionality

#14 michabirklbauer closed 7 months ago
1
Revert "Add missing changes from new implementation"

#13 michabirklbauer closed 7 months ago
0
Add missing changes from new implementation

#12 michabirklbauer closed 7 months ago
0
Full integration of everything we had in Fragment Explorer into Tab 2

#11 michabirklbauer closed 7 months ago
0
Spectrum Selection

#10 michabirklbauer closed 7 months ago
4
a start #6

#9 carolinelennartsson closed 7 months ago
0
Main Structure & Integration of Fragannot

#8 michabirklbauer closed 8 months ago
4