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michaelgruenstaeudl / PACVr

Plastome Assembly Coverage Visualization in R
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The software tool Mosdepth was not detected on your system. #2

Closed Silverfoxcome closed 4 years ago

Silverfoxcome commented 4 years ago

Hi! I was trying to reproduce the example data given in extdata but I run into this problem:

The software tool Mosdepth (https://github.com/brentp/mosdepth) was not detected on your system. Please install it, for example via R command: system("conda install -y mosdepth")

The problem is that I already installed Mosdepth via conda with: https://anaconda.org/bioconda/mosdepth

but it always gives me the same error message.

Is there some way I can work around this problem?

edit: Solved, I give the absolute path to mosdepht and it worked, but I think I have a new problem. Will open another issue for it.

Thank you so much :)