michaelgruenstaeudl / PlastomeBurstAndAlign

A Python tool to extract and align genes, introns, and intergenic spacers across hundreds of plastid genomes using associative arrays
BSD 3-Clause "New" or "Revised" License
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Refactor loops #15

Closed KeatonRowley closed 10 months ago

KeatonRowley commented 10 months ago

Changed some semantics: seq_name = genename + '' + rec.name #f"{genename}{rec.name}" as I thought slightly more readable. Fixed min_num_taxa error. Ran with setting min_num_taxa = 2, and error no longer present. Updated cpu core to try and determine number of threads available, and catch NotImplementedError exceptions