Using replica exchange simulation and working genome wide? - Githubissues

michaelhabeck / isdhic

Inferential structure determination of chromosomes

MIT License

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Using replica exchange simulation and working genome wide? #4

Open tarak77 opened 6 years ago

tarak77 commented 6 years ago

Hello,

I am familiar with run_hmc.py and analyze.py to generate single chromosome model.

I am trying to run "run_rex.py" on my single cell data at 250kb resolution without FISH data. Due to high resolution it takes a while to run but in the end i get the following warning:
When i run "run_parallel.py", I get the following error:

Any idea why i am getting those errors?

Also, can I get ensembles of entire genome using ISD?

Any help will be great!

Thanks, Tarak