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michaelkyu / MobMess

GNU General Public License v3.0
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raise KeyError(f"{not_found} not in index") #3

Closed natachacouto closed 1 year ago

natachacouto commented 1 year ago

Hey, I'm trying to run MobMess on a large dataset of 2894 plasmids but I keep getting the same error:

mobmess systems --sequences all_plasmids.fasta --complete all_plasmids_circular.txt --output all_plasmids-mobmess/ --threads 24 --ani ./all_plasmids-mobmess/_ani.txt --tmp TMP
Reading fasta file of sequences at all_plasmids.fasta (09:55:03)
Reading circularity/completeness information at all_plasmids_circular.txt (09:55:06)
Using temporary directory: TMP (This will NOT be deleted after execution)
Reading prespecified ANI table at ./all_plasmids-mobmess/_ani.txt (09:55:06)
Dereplicating and inferring systems (09:55:11)
ANI pairs before threshold: 2941437
ANI pairs after threshold: 48597
igraph.Graph object:
IGRAPH DNW- 2894 48597 --
+ attr: name (v), col (e), row (e), weight (e)
Strongly connected components: 1273
Temporary directory TMP was NOT deleted.
Traceback (most recent call last):
  File "/home/ubuntu/miniconda3/envs/mobmess/bin/mobmess", line 8, in <module>
    sys.exit(run())
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/mobmess/mobmess_script.py", line 239, in run
    args.func(args)
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/mobmess/mobmess_script.py", line 90, in infer_systems
    ani_utils.derep_sources(similarities, similarity_threshold, min_alignment_fraction,
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/mobmess/ani_utils.py", line 375, in derep_sources
    'members_lengths' : map(tuple, np.split(lengths.loc[rownames[np.concatenate(list(clusters))]].values, np.cumsum([len(c2) for c2 in clusters])[:-1]))
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/pandas/core/indexing.py", line 1073, in __getitem__
    return self._getitem_axis(maybe_callable, axis=axis)
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/pandas/core/indexing.py", line 1301, in _getitem_axis
    return self._getitem_iterable(key, axis=axis)
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/pandas/core/indexing.py", line 1239, in _getitem_iterable
    keyarr, indexer = self._get_listlike_indexer(key, axis)
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/pandas/core/indexing.py", line 1432, in _get_listlike_indexer
    keyarr, indexer = ax._get_indexer_strict(key, axis_name)
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 6113, in _get_indexer_strict
    self._raise_if_missing(keyarr, indexer, axis_name)
  File "/home/ubuntu/miniconda3/envs/mobmess/lib/python3.10/site-packages/pandas/core/indexes/base.py", line 6176, in _raise_if_missing
    raise KeyError(f"{not_found} not in index")
KeyError: "['SPARK_9_C1_3', 'SPARK_9_C1_2', 'SPARK_882_C1_2', 'SPARK_847_C1_2', 'SPARK_77_C1_3', 'SPARK_77_C1_2', 'SPARK_718_C1_repeat_3', 'SPARK_718_C1_repeat_2', 'SPARK_62_C2_2', 'SPARK_62_C2_5', 'SPARK_56_C2_6', 'SPARK_536_C1_4', 'SPARK_50_C1_4', 'SPARK_50_C1_3', 'SPARK_50_C1_2', 'SPARK_501_C1_2', 'SPARK_3_C1_4', 'SPARK_3_C1_3', 'SPARK_56_C2_2', 'SPARK_62_C2_3', 'SPARK_315_C1_2', 'SPARK_309_C2_2', 'SPARK_2879_C1_all_2', 'SPARK_2810_C2_2', 'SPARK_2803_C1_2', 'SPARK_2775_C2_2', 'SPARK_50_C1_6', 'SPARK_2668_C1_3', 'SPARK_2615_C1_3', 'SPARK_2615_C1_2', 'SPARK_2600_C1_4', 'SPARK_2564_C1_4', 'SPARK_2568_C1_4', 'SPARK_2564_C1_3', 'SPARK_2568_C1_2', 'SPARK_2522_C2_all_5', 'SPARK_2511_C1_2', 'SPARK_2445_C2_8', 'SPARK_2445_C2_7', 'SPARK_2445_C2_5', 'SPARK_2445_C2_4', 'SPARK_2445_C2_3', 'SPARK_2445_C2_2', 'SPARK_2445_C2_11', 'SPARK_2387_C1_2', 'SPARK_2332_C1_7', 'SPARK_2332_C1_5', 'SPARK_2323_C1_5', 'SPARK_2323_C1_4', 'SPARK_2323_C1_3', 'SPARK_2322_C1_3', 'SPARK_2290_C1_8', 'SPARK_2290_C1_3', 'SPARK_2225_C1_8', 'SPARK_2225_C1_4', 'SPARK_2225_C1_10', 'SPARK_2220_C1_2', 'SPARK_2212_C2_4', 'SPARK_2212_C2_3', 'SPARK_2212_C2_2', 'SPARK_2100_C2_all_4', 'SPARK_2100_C2_all_2', 'SPARK_201_C1_5', 'SPARK_201_C2_6', 'SPARK_212_C1_Tromso_5', 'SPARK_194_C1_Tromso_2', 'SPARK_194_C2_2', 'SPARK_201_C1_2', 'SPARK_201_C2_2', 'SPARK_212_C1_Tromso_2', 'SPARK_2445_C2_10', 'SPARK_1940_C1_2', 'SPARK_193_C1_6', 'SPARK_195_C1_5', 'SPARK_195_C2_5', 'SPARK_199_C1_4', 'SPARK_202_C1_Tromso_4', 'SPARK_209_C1_3', 'SPARK_1938_C1_3', 'SPARK_1940_C1_3', 'SPARK_1938_C1_2', 'SPARK_1938_C1_5', 'SPARK_1940_C1_5', 'SPARK_1922_C1_Tromso_11', 'SPARK_1924_C1_5', 'SPARK_780_C2_2', 'SPARK_505_C1_2', 'SPARK_2225_C1_3', 'SPARK_1906_C1_5', 'SPARK_2225_C1_9', 'SPARK_1865_C1_4', 'SPARK_201_C1_3', 'SPARK_201_C2_4', 'SPARK_212_C1_Tromso_3', 'SPARK_195_C1_3', 'SPARK_195_C2_3', 'SPARK_1862_C1_Tromso_4', 'SPARK_1914_C1_repeat_4', 'SPARK_1917_C1_4', 'SPARK_1920_C1_4', 'SPARK_1861_C1_4', 'SPARK_1863_C1_DNA_4', 'SPARK_1864_C1_4', 'SPARK_1866_C1_5', 'SPARK_1859_C1_Tromso_8', 'SPARK_1860_C1_9', 'SPARK_1859_C1_Tromso_7', 'SPARK_1860_C1_8', 'SPARK_197_C1_repeat_5', 'SPARK_198_C1_5', 'SPARK_200_C1_5', 'SPARK_203_C1_5', 'SPARK_204_C1_5', 'SPARK_205_C1_5', 'SPARK_206_C1_6', 'SPARK_207_C1_5', 'SPARK_210_C1_Tromso_5', 'SPARK_214_C1_5', 'SPARK_699_C1_6', 'SPARK_1859_C1_Tromso_5', 'SPARK_1860_C1_6', 'SPARK_1862_C1_Tromso_3', 'SPARK_1914_C1_repeat_3', 'SPARK_1917_C1_3', 'SPARK_1920_C1_3', 'SPARK_1925_C1_6', 'SPARK_185_C1_4', 'SPARK_252_C2_2', 'SPARK_252_C3_3', 'SPARK_895_C1_2', 'SPARK_1831_C1_6', 'SPARK_1831_C1_4', 'SPARK_1831_C1_2', 'SPARK_26_C1_4', 'SPARK_3_C1_2', 'SPARK_1810_C1_7', 'SPARK_2600_C1_5', 'SPARK_1810_C1_6', 'SPARK_1810_C1_4', 'SPARK_1810_C1_3', 'SPARK_1793_C1_8', 'SPARK_1793_C1_6', 'SPARK_1793_C1_5', 'SPARK_1793_C1_4', 'SPARK_1793_C1_3', 'SPARK_1793_C1_2', 'SPARK_1793_C1_13', 'SPARK_2225_C1_12', 'SPARK_1780_C1_3', 'SPARK_1780_C1_2', 'SPARK_2220_C1_3', 'SPARK_1938_C1_4', 'SPARK_1940_C1_4', 'SPARK_188_C1_4', 'SPARK_1659_C1_3', 'SPARK_1659_C1_2', 'SPARK_1642_C1_5', 'SPARK_1642_C1_2', 'SPARK_1635_C1_3', 'SPARK_2323_C1_2', 'SPARK_1635_C1_2', 'SPARK_1963_C1_2', 'SPARK_2322_C1_2', 'SPARK_1630_C1_5', 'SPARK_1630_C1_4', 'SPARK_1630_C1_3', 'SPARK_1630_C1_2', 'SPARK_1623_C2_2', 'SPARK_1793_C1_9', 'SPARK_2290_C1_5', 'SPARK_536_C1_3', 'SPARK_160_C1_3', 'SPARK_160_C1_2', 'SPARK_1563_C1_5', 'SPARK_1563_C1_3', 'SPARK_1563_C1_2', 'SPARK_1537_C1_3', 'SPARK_2511_C1_3', 'SPARK_1537_C1_2', 'SPARK_2290_C1_4', 'SPARK_1532_C1_repeat_8', 'SPARK_1532_C1_repeat_4', 'SPARK_1532_C1_repeat_3', 'SPARK_1532_C1_repeat_2', 'SPARK_1515_C1_2', 'SPARK_2231_C1_2', 'SPARK_56_C2_3', 'SPARK_1495_C1_3', 'SPARK_1495_C1_2', 'SPARK_1492_C1_6', 'SPARK_1492_C1_5', 'SPARK_1492_C1_4', 'SPARK_1492_C1_3', 'SPARK_1492_C1_2', 'SPARK_1487_C2_9', 'SPARK_1487_C2_7', 'SPARK_1793_C1_10', 'SPARK_1487_C2_4', 'SPARK_1487_C2_3', 'SPARK_1487_C2_2', 'SPARK_1487_C2_10', 'SPARK_2600_C1_3', 'SPARK_2332_C1_4', 'SPARK_2225_C1_6', 'SPARK_1428_C1_6', 'SPARK_2445_C2_9', 'SPARK_1428_C1_5', 'SPARK_1428_C1_4', 'SPARK_1428_C1_3', 'SPARK_1423_C1_5', 'SPARK_1423_C1_3', 'SPARK_1906_C1_3', 'SPARK_138_C1_3', 'SPARK_1793_C1_12', 'SPARK_1487_C2_5', 'SPARK_1532_C1_repeat_11', 'SPARK_2290_C1_6', 'SPARK_62_C2_6', 'SPARK_1793_C1_7', 'SPARK_1635_C1_4', 'SPARK_1630_C1_6', 'SPARK_2600_C1_6', 'SPARK_2842_C2_2', 'SPARK_195_C1_4', 'SPARK_195_C2_4', 'SPARK_196_C1_4', 'SPARK_202_C1_Tromso_3', 'SPARK_2231_C1_3', 'SPARK_1642_C1_3', 'SPARK_1824_C1_3', 'SPARK_1810_C1_9', 'SPARK_2290_C1_7', 'SPARK_819_C1_repeat_3', 'SPARK_1642_C1_4', 'SPARK_614_C1_3', 'SPARK_11_C3_3', 'SPARK_11_C3_2', 'SPARK_2600_C1_2', 'SPARK_1182_C1_4', 'SPARK_1182_C1_2', 'SPARK_1808_C2_2', 'SPARK_2576_C1_2', 'SPARK_1164_C3_3', 'SPARK_1164_C3_2', 'SPARK_1158_C1_repeat_3', 'SPARK_1158_C1_repeat_2', 'SPARK_1144_C2_6', 'SPARK_2568_C1_3', 'SPARK_1144_C2_5', 'SPARK_1144_C2_2', 'SPARK_26_C1_2', 'SPARK_492_C1_2', 'SPARK_492_C2_2', 'SPARK_1144_C2_10', 'SPARK_1142_C1_5', 'SPARK_492_C1_4', 'SPARK_492_C2_4', 'SPARK_1144_C2_4', 'SPARK_1142_C1_3', 'SPARK_1144_C2_3', 'SPARK_492_C1_3', 'SPARK_492_C2_3', 'SPARK_1532_C1_repeat_9', 'SPARK_1810_C1_8', 'SPARK_2517_C1_3', 'SPARK_56_C2_4', 'SPARK_62_C2_4', 'SPARK_1925_C1_7', 'SPARK_1106_C1_4', 'SPARK_1906_C1_4', 'SPARK_1106_C1_3', 'SPARK_1884_C1_4', 'SPARK_1188_C1_6', 'SPARK_1635_C1_5', 'SPARK_1563_C1_4', 'SPARK_1080_C1_4', 'SPARK_1144_C2_8', 'SPARK_1048_C1_3', 'SPARK_1080_C1_6', 'SPARK_1179_C1_7', 'SPARK_1022_C1_3', 'SPARK_1022_C1_2', 'SPARK_1014_C2_3', 'SPARK_1048_C1_2', 'SPARK_1160_C1_2', 'SPARK_1188_C1_2', 'SPARK_1464_C1_3', 'SPARK_1771_C1_2', 'SPARK_771_C1_2', 'SPARK_1080_C1_3', 'SPARK_1179_C1_3', 'SPARK_1824_C1_2', 'SPARK_11_C3_4', 'SPARK_1815_C1_4', 'SPARK_1824_C1_4', 'SPARK_1153_C2_3', 'SPARK_1259_C1_3', 'SPARK_1317_C1_4', 'SPARK_135_C1_4', 'SPARK_1502_C1_3', 'SPARK_1736_C1_3', 'SPARK_1815_C1_3', 'SPARK_1819_C1_3', 'SPARK_188_C1_3', 'SPARK_357_C1_3', 'SPARK_42_C1_3', 'SPARK_974_C1_2', 'SPARK_1815_C1_2', 'SPARK_1744_C1_2', 'SPARK_2054_C2_2', 'SPARK_26_C1_3', 'SPARK_1317_C1_2', 'SPARK_1859_C1_Tromso_2', 'SPARK_1860_C1_2', 'SPARK_1884_C1_2', 'SPARK_1922_C1_Tromso_4', 'SPARK_1924_C1_2', 'SPARK_441_C1_3', 'SPARK_2517_C1_2', 'SPARK_2290_C1_2', 'SPARK_2668_C1_2', 'SPARK_2225_C1_2', 'SPARK_1906_C1_2', 'OH-DART_30903-KN1_4', 'OH-DART_30833-KN1_5', 'OH-DART_30833-KN1_3', 'OH-DART_30820-KN1_7', 'SPARK_1182_C1_3', 'SPARK_1487_C2_8', 'SPARK_1532_C1_repeat_10', 'SPARK_1793_C1_11', 'OH-DART_30820-KN1_5', 'OH-DART_30820-KN1_2', 'OH-DART_30807-KN1_2', 'OH-DART_30804-EC1_4', 'OH-DART_30804-EC1_3', 'OH-DART_30786-KN1_5', 'OH-DART_30785-KC1_6', 'OH-DART_30788-KC1_5', 'OH-DART_30788-KN1_6', 'OH-DART_30785-KC1_4', 'OH-DART_30788-KC1_4', 'OH-DART_30788-KN1_5', 'OH-DART_30783-KN1_9', 'OH-DART_30783-KN1_6', 'OH-DART_30783-KN1_3', 'SPARK_1865_C1_3', 'SPARK_1925_C1_5', 'SPARK_197_C1_repeat_3', 'SPARK_198_C1_3', 'SPARK_200_C1_3', 'SPARK_203_C1_3', 'SPARK_204_C1_3', 'SPARK_205_C1_3', 'SPARK_206_C1_3', 'SPARK_207_C1_3', 'SPARK_210_C1_Tromso_3', 'SPARK_214_C1_3', 'OH-DART_30765-KN1_7', 'OH-DART_30764-KN1_7', 'OH-DART_30764-KN1_6', 'OH-DART_30764-KN1_3', 'OH-DART_30745-KN1_5', 'OH-DART_30745-KN1_3', 'OH-DART_30745-KN1_2', 'OH-DART_30714-KN1_5', 'OH-DART_30785-KN1_4', 'OH-DART_30786-KN1_3', 'OH-DART_30714-KN1_2', 'OH-DART_30763-KN1_3', 'SPARK_1861_C1_2', 'SPARK_1863_C1_DNA_2', 'SPARK_1864_C1_2', 'SPARK_1866_C1_3', 'SPARK_1922_C1_Tromso_5', 'SPARK_1924_C1_3', 'SPARK_197_C1_repeat_2', 'SPARK_198_C1_2', 'SPARK_200_C1_2', 'SPARK_203_C1_2', 'SPARK_204_C1_2', 'SPARK_205_C1_2', 'SPARK_206_C1_2', 'SPARK_207_C1_2', 'SPARK_210_C1_Tromso_2', 'SPARK_214_C1_2', 'SPARK_2687_C1_2', 'OH-DART_30695-KN1_8', 'OH-DART_30695-KN1_4', 'OH-DART_30692-KN1_3', 'OH-DART_30649-KN1_5', 'OH-DART_30646-KN1_9', 'OH-DART_30695-KN1_7', 'OH-DART_30804-KN1_8', 'OH-DART_30805-KN1_8', 'OH-DART_30821-KN2_7', 'OH-DART_30841-KN1_7', 'OH-DART_30646-KN1_5', 'OH-DART_30646-KN1_3', 'OH-DART_30804-KN1_3', 'OH-DART_30805-KN1_4', 'OH-DART_30821-KN2_3', 'OH-DART_30841-KN1_3', 'OH-DART_30646-KN1_2', 'OH-DART_30804-KN1_2', 'OH-DART_30805-KN1_2', 'OH-DART_30821-KN2_2', 'OH-DART_30646-KN1_10', 'OH-DART_30804-KN1_9', 'OH-DART_30805-KN1_9', 'OH-DART_30821-KN2_8', 'OH-DART_30841-KN1_8', 'OH-DART_30627-KN1_3', 'OH-DART_30624-KN1_5', 'OH-DART_30624-KN1_4', 'OH-DART_30902-KN1_5', 'OH-DART_30615-KN1_8', 'OH-DART_30615-KN1_7', 'OH-DART_30615-KN1_6', 'OH-DART_30469-KC1_7', 'OH-DART_30470-KC1_7', 'SPARK_1423_C1_4', 'OH-DART_30452-EN1_5', 'OH-DART_30452-EN1_3', 'OH-DART_30452-KN1_3', 'OH-DART_30649-KN1_2', 'OH-DART_30695-KN1_2', 'OH-DART_30765-KN1_2', 'OH-DART_30783-KN1_2', 'OH-DART_30452-EN1_10', 'OH-DART_30452-KN1_6', 'OH-DART_30450-KN2_8', 'OH-DART_30624-KN1_6', 'SPARK_1871_C1_3', 'SPARK_1871_C2_5', 'SPARK_1923_C1_3', 'SPARK_199_C1_5', 'SPARK_202_C1_Tromso_5', 'SPARK_2530_C2_4', 'SPARK_699_C1_5', 'OH-DART_30450-KN2_2', 'OH-DART_30450-KN2_11', 'OH-DART_30624-KN1_7', 'OH-DART_30646-KN1_11', 'OH-DART_30783-KN1_10', 'OH-DART_30821-KN2_9', 'OH-DART_30841-KN1_9', 'OH-DART_30151-KN1_5', 'OH-DART_30151-KN1_2', 'OH-DART_30786-KN1_2', 'OH-DART_30092-KN2_5', 'OH-DART_30092-KC1_7', 'OH-DART_30093-KC1_7', 'OH-DART_30092-KC1_6', 'OH-DART_30093-KC1_6', 'OH-DART_30092-KC1_5', 'OH-DART_30093-KC1_5', 'OH-DART_30089-KN1_2', 'OH-DART_30082-EC1_8', 'SPARK_1824_C1_5', 'OH-DART_30030-EN1_39', 'OH-DART_30030-EN1_35', 'OH-DART_30030-EN1_33', 'OH-DART_30903-KN1_2', 'OH-DART_30008-KN2_2', 'OH-DART_30133-KN2_2', 'OH-DART_30833-KN1_2', 'OH-DART_30005-KC1_8', 'OH-DART_30005-KC1_7', 'OH-DART_30005-KC1_6', 'OH-DART_30005-KC1_5', 'OH-DART_24069-KN1_8', 'SPARK_1487_C2_6', 'OH-DART_24069-KN1_5', 'OH-DART_21439-EC1_4', 'OH-DART_30225-EC1_4', 'OH-DART_30226-EC1_5', 'OH-DART_21439-EC1_3', 'OH-DART_30225-EC1_3', 'OH-DART_30226-EC1_3', 'OH-DART_20981-KN1_5', 'OH-DART_20981-KN1_3', 'OH-DART_20166-EC1_6', 'OH-DART_30333-EC1_3', 'OH-DART_20166-EC1_3', 'OH-DART_108321-KN1_4', 'OH-DART_108321-KN1_3', 'OH-DART_108305-EN1_3', 'OH-DART_108172-EN1_9', 'OH-DART_20981-KN1_2', 'OH-DART_108172-EN1_6', 'OH-DART_108172-EN1_10', 'OH-DART_108168-EN2_8', 'OH-DART_108168-EN2_7', 'OH-DART_108168-EN2_5', 'OH-DART_108172-EN1_7', 'OH-DART_30082-EC1_5', 'OH-DART_108168-EN2_10', 'OH-DART_108168-EN1_8', 'OH-DART_108168-EN1_10', 'OH-DART_108167-EN1_6', 'OH-DART_108164-EN1_4', 'OH-DART_108163-KN1_6', 'OH-DART_30008-KN2_3', 'OH-DART_30133-KN2_3', 'OH-DART_30833-KN1_4', 'OH-DART_108163-KN1_5', 'OH-DART_30785-KN1_2', 'OH-DART_30843-KN1_3', 'OH-DART_30904-KN2_2', 'SPARK_1848_C1_3', 'SPARK_1871_C1_2', 'SPARK_1871_C2_3', 'SPARK_1923_C1_2', 'SPARK_193_C1_3', 'SPARK_196_C1_2', 'SPARK_199_C1_2', 'SPARK_202_C1_Tromso_2', 'SPARK_209_C1_2', 'SPARK_1865_C1_2', 'SPARK_1861_C1_3', 'SPARK_1863_C1_DNA_3', 'SPARK_1864_C1_3', 'SPARK_1866_C1_4', 'SPARK_1179_C1_4', 'SPARK_1013_C2_2', 'OH-DART_30714-KN1_3', 'OH-DART_30695-KN1_5', 'OH-DART_30469-KC1_3', 'OH-DART_30470-KC1_3', 'OH-DART_30030-EN1_3', 'OH-DART_30615-KN1_3', 'OH-DART_30627-KN1_2', 'OH-DART_30807-KN1_3', 'OH-DART_108201-EN1_3', 'OH-DART_108201-EN1_2', 'OH-DART_108200-KN1_2', 'OH-DART_108169-EN1_2', 'OH-DART_108163-KN1_4', 'OH-DART_108163-EN2_8', 'OH-DART_108163-EN2_7', 'OH-DART_108200-EN1_2', 'OH-DART_108164-EN1_2', 'OH-DART_108163-EN2_2', 'OH-DART_108162-EN1_9', 'OH-DART_108162-EN1_8', 'OH-DART_108162-EN1_5', 'OH-DART_108162-EN1_4', 'OH-DART_108161-EN1_6', 'OH-DART_108161-EN1_5', 'OH-DART_108161-EN1_2', 'OH-DART_108150-KN1_4', 'OH-DART_108150-KN1_2', 'OH-DART_108148-KN2_9', 'OH-DART_108148-KN2_8', 'OH-DART_20981-KN1_6', 'SPARK_2231_C1_4', 'SPARK_3_C1_6', 'OH-DART_108148-KN2_7', 'OH-DART_108162-EN1_2', 'OH-DART_108148-KN2_4', 'OH-DART_108148-KN2_3', 'OH-DART_108148-KN2_11', 'OH-DART_30745-KN1_10', 'SPARK_1906_C1_6', 'OH-DART_108148-KN2_10', 'OH-DART_108148-KN1_8', 'OH-DART_108148-KN1_7', 'OH-DART_30133-KN2_4', 'OH-DART_30833-KN1_6', 'OH-DART_108148-KN1_6', 'OH-DART_108148-EC1_3', 'OH-DART_108145-KN1_4', 'OH-DART_30030-EN1_36', 'OH-DART_108145-KN1_3', 'OH-DART_108145-EN1_3', 'OH-DART_108142-EN2_6', 'OH-DART_108143-KN1_6', 'OH-DART_108167-EN1_5', 'OH-DART_108168-EN2_4', 'SPARK_185_C1_3', 'SPARK_974_C1_3', 'OH-DART_108142-EN2_5', 'OH-DART_108143-KN1_5', 'OH-DART_108142-EN2_4', 'OH-DART_108143-KN1_4', 'OH-DART_108168-EN1_3', 'OH-DART_108142-EN1_5', 'OH-DART_108142-EN1_3', 'OH-DART_108141-EN1_5', 'OH-DART_108141-EN1_3', 'OH-DART_108133-KN1_4', 'OH-DART_30769-KN1_3', 'SPARK_1831_C1_5', 'SPARK_194_C1_Tromso_5', 'SPARK_194_C2_5', 'SPARK_2668_C1_6', 'SPARK_2445_C2_6', 'OH-DART_24069-KN1_4', 'OH-DART_108133-KN1_3', 'OH-DART_108133-KN1_2', 'OH-DART_108133-EN1_4', 'OH-DART_30082-EC1_2', 'OH-DART_108133-EN1_2', 'OH-DART_108131-KN1_4', 'OH-DART_108131-KN1_3', 'OH-DART_108131-KN1_2', 'OH-DART_108127-EN1_3', 'OH-DART_108150-EN1_3', 'OH-DART_108126-EN1_6', 'OH-DART_108120-EN1_5', 'SPARK_1144_C2_9', 'OH-DART_108120-EN1_4', 'OH-DART_108118-EN1_8', 'SPARK_2668_C1_5', 'OH-DART_30807-KN1_4', 'OH-DART_30469-KC1_4', 'OH-DART_30470-KC1_4', 'OH-DART_25110-EC1_6', 'OH-DART_24069-KN1_2', 'OH-DART_108169-EN1_3', 'OH-DART_108168-EN1_2', 'OH-DART_108167-EN1_3', 'OH-DART_108165-EN1_3', 'OH-DART_108161-EN1_3', 'OH-DART_108142-EN2_3', 'OH-DART_108143-KN1_3', 'OH-DART_108118-EN1_4', 'OH-DART_108115-EN2_8', 'OH-DART_108118-EN1_9', 'OH-DART_108115-EN2_2', 'OH-DART_108118-EN1_2', 'OH-DART_108126-EN1_3', 'OH-DART_108115-EN1_3', 'OH-DART_108141-EN1_2', 'OH-DART_108115-EN1_2', 'OH-DART_108114-EN1_3', 'OH-DART_25110-EC1_11', 'OH-DART_30450-KN2_12', 'OH-DART_108113-EN2_8', 'OH-DART_108113-EN2_3', 'OH-DART_108113-EN2_12', 'OH-DART_108113-EN2_11', 'OH-DART_108113-EN1_2', 'OH-DART_108113-EC1_5', 'OH-DART_108163-KN1_7', 'OH-DART_30745-KN1_9', 'SPARK_1022_C1_4', 'SPARK_1537_C1_4', 'SPARK_2511_C1_4', 'OH-DART_108112-EN1_4', 'OH-DART_108111-EN1_2', 'OH-DART_108110-KN1_5', 'OH-DART_108110-KN1_4', 'OH-DART_108113-EC1_4', 'SPARK_1532_C1_repeat_7', 'OH-DART_108163-KN1_3', 'OH-DART_108110-KN1_3', 'OH-DART_108113-EC1_2', 'OH-DART_108110-KN1_2', 'OH-DART_108113-EC1_3', 'OH-DART_30005-KC1_3', 'OH-DART_30089-KN1_3', 'OH-DART_30615-KN1_4', 'OH-DART_30624-KN1_3', 'OH-DART_30649-KN1_4', 'OH-DART_30714-KN1_4', 'OH-DART_30763-KN1_4', 'OH-DART_30785-KN1_3', 'OH-DART_30902-KN1_4', 'OH-DART_30903-KN1_3', 'OH-DART_30904-KN2_3', 'SPARK_1859_C1_Tromso_4', 'SPARK_1860_C1_5', 'SPARK_1922_C1_Tromso_7', 'SPARK_1924_C1_4', 'SPARK_196_C1_3', 'SPARK_699_C1_3', 'OH-DART_108110-EN2_4', 'OH-DART_108110-EN1_3', 'OH-DART_108109-KN1_5', 'OH-DART_108109-KN1_4', 'OH-DART_30092-KC1_4', 'OH-DART_30093-KC1_4', 'OH-DART_108109-EN2_6', 'OH-DART_108167-EN1_8', 'OH-DART_30692-KN1_6', 'OH-DART_108113-EN2_9', 'OH-DART_108113-EN2_4', 'OH-DART_108109-EN2_3', 'OH-DART_108113-EN2_2', 'OH-DART_108109-EN1_8', 'OH-DART_108109-EC1_8', 'OH-DART_21439-EC1_8', 'OH-DART_30225-EC1_8', 'OH-DART_30226-EC1_9', 'SPARK_2231_C1_5', 'OH-DART_108109-EC1_6', 'OH-DART_108126-EN1_7', 'OH-DART_21439-EC1_5', 'OH-DART_30225-EC1_5', 'OH-DART_30226-EC1_6', 'SPARK_699_C1_7', 'SPARK_974_C1_6', 'OH-DART_108109-EC1_5', 'OH-DART_21439-EC1_2', 'OH-DART_30225-EC1_2', 'OH-DART_30226-EC1_2', 'OH-DART_108107-EN2_2', 'OH-DART_108106-EN1_5', 'OH-DART_108106-EN1_3', 'OH-DART_108145-EN1_2', 'OH-DART_108106-EN1_2', 'OH-DART_108105-EN1_7', 'OH-DART_108105-EN1_5', 'SPARK_1144_C2_7', 'OH-DART_108104-EN1_5', 'OH-DART_108104-EN1_4', 'OH-DART_108104-EN1_3', 'OH-DART_108104-EN1_2', 'OH-DART_108104-EN1_14', 'SPARK_2225_C1_15', 'OH-DART_108103-EN1_4', 'OH-DART_108120-EN2_4', 'OH-DART_108148-EC1_5', 'OH-DART_108103-EN1_3', 'OH-DART_108102-KN1_7', 'OH-DART_108163-EN2_9', 'OH-DART_108102-EN2_8', 'OH-DART_108102-EN2_7', 'OH-DART_108102-EN2_5', 'SPARK_1864_C1_5', 'SPARK_1866_C1_6', 'OH-DART_108165-EN1_4', 'OH-DART_108320-EN1_5', 'OH-DART_108075-EN1_8', 'OH-DART_108075-EN1_5', 'OH-DART_108075-EN1_4', 'OH-DART_108075-EN1_3', 'OH-DART_108075-EN1_2', 'OH-DART_108075-EN1_12', 'OH-DART_108112-EN1_5', 'OH-DART_108113-EN2_10', 'OH-DART_108163-EN2_10', 'OH-DART_108306-EN1_3', 'OH-DART_21439-EC1_6', 'OH-DART_30225-EC1_6', 'OH-DART_30226-EC1_7', 'OH-DART_108073-KC1_6', 'OH-DART_108073-KN1_6', 'OH-DART_108150-KN1_3', 'OH-DART_25927-KC1_6', 'OH-DART_25927-KN1_6', 'OH-DART_25928-KN1_6', 'OH-DART_30151-KN1_7', 'OH-DART_108073-KC1_4', 'OH-DART_108073-KN1_4', 'OH-DART_25927-KC1_4', 'OH-DART_25927-KN1_4', 'OH-DART_25928-KN1_4', 'OH-DART_108073-KC1_3', 'OH-DART_108073-KN1_3', 'OH-DART_25927-KN1_3', 'OH-DART_25928-KN1_3', 'OH-DART_108073-EN1_2', 'OH-DART_108072-KN1_4', 'OH-DART_108072-KN1_2', 'OH-DART_108072-KC1_5', 'OH-DART_30008-KN2_4', 'SPARK_1642_C1_6', 'OH-DART_108072-KC1_4', 'OH-DART_108072-KC1_3', 'OH-DART_108072-KC1_2', 'OH-DART_108072-EN1_4', 'OH-DART_108120-EN1_6', 'OH-DART_108072-EN1_3', 'OH-DART_108072-EN1_2', 'OH-DART_108071-EN1_2', 'OH-DART_108071-EN2_2', 'OH-DART_108068-EN2_3', 'OH-DART_108068-EN2_2', 'OH-DART_108068-EN1_6', 'OH-DART_108068-EN2_4', 'OH-DART_30082-EC1_7', 'SPARK_2225_C1_13', 'OH-DART_108163-KN1_8', 'OH-DART_108068-EN1_4', 'OH-DART_108068-EN1_3', 'OH-DART_108067-EN2_9', 'OH-DART_108127-EN2_4', 'OH-DART_108067-EN2_7', 'OH-DART_108067-EN1_4', 'OH-DART_108142-EN1_4', 'OH-DART_108067-EN1_3', 'SPARK_185_C1_2', 'SPARK_2182_C1_repeat_2', 'SPARK_815_C1_2', 'SPARK_1160_C1_3', 'SPARK_1463_C1_3', 'SPARK_1771_C1_3', 'SPARK_771_C1_3', 'SPARK_1153_C2_2', 'SPARK_1194_C1_2', 'SPARK_1259_C1_2', 'SPARK_1317_C1_3', 'SPARK_135_C1_2', 'SPARK_1377_C1_2', 'SPARK_1423_C1_2', 'SPARK_1502_C1_2', 'SPARK_1736_C1_2', 'SPARK_1819_C1_2', 'SPARK_1884_C1_3', 'SPARK_357_C1_2', 'SPARK_42_C1_2', 'SPARK_923_C1_2', 'SPARK_980_C1_2', 'SPARK_989_C1_2', 'SPARK_1813_C1_2', 'SPARK_1078_C1_2', 'SPARK_226_C1_2', 'SPARK_441_C1_2', 'SPARK_641_C1_4', 'SPARK_987_C1_2', 'SPARK_965_C1_2', 'SPARK_1014_C2_2', 'SPARK_1464_C1_2', 'OH-DART_30469-KC1_2', 'OH-DART_30470-KC1_2', 'OH-DART_108172-EN1_2', 'OH-DART_108145-KN1_2', 'OH-DART_108122-EN1_3', 'OH-DART_108114-KN1_2', 'OH-DART_108067-EN1_2', 'OH-DART_108067-EN1_10', 'OH-DART_108115-EN2_11', 'OH-DART_108118-EN1_11', 'OH-DART_108066-KN1_5', 'OH-DART_108066-EN2_4', 'OH-DART_108066-EN2_2', 'OH-DART_108066-EN1_5', 'OH-DART_108066-EN2_6', 'OH-DART_108066-EN1_4', 'OH-DART_108066-EN2_5', 'OH-DART_108066-EN1_3', 'OH-DART_108066-EN2_3', 'OH-DART_108066-EN1_2', 'OH-DART_108064-EN1_5', 'OH-DART_108064-EN1_3', 'OH-DART_108064-EN1_2', 'OH-DART_108061-EN1_2', 'OH-DART_108060-EN1_5', 'OH-DART_108060-EN1_4', 'OH-DART_108060-EN1_3', 'OH-DART_108060-EN1_2', 'OH-DART_108055-EN1_4', 'OH-DART_108067-EN1_7', 'OH-DART_108075-EN1_10', 'OH-DART_108104-EN1_10', 'OH-DART_108109-EN2_5', 'OH-DART_108113-EN2_7', 'OH-DART_108115-EN2_6', 'OH-DART_108118-EN1_7', 'OH-DART_108167-EN1_7', 'OH-DART_108168-EN2_6', 'OH-DART_108169-EN1_6', 'OH-DART_30450-KN2_10', 'OH-DART_108055-EN1_3', 'OH-DART_108053-KN1_5', 'OH-DART_108054-KN1_12', 'SPARK_2225_C1_14', 'OH-DART_108053-KN1_3', 'OH-DART_108053-KN1_2', 'OH-DART_108053-KC1_7', 'OH-DART_108073-KC1_2', 'OH-DART_108073-KN1_2', 'OH-DART_25927-KC1_2', 'OH-DART_25927-KN1_2', 'OH-DART_25928-KN1_2', 'OH-DART_108053-KC1_6', 'OH-DART_108053-EN1_3', 'OH-DART_108051-EN2_4', 'OH-DART_108051-EN2_2', 'OH-DART_108051-EN1_3', 'OH-DART_108164-EN1_5', 'SPARK_1428_C1_2', 'OH-DART_30745-KN1_4', 'OH-DART_20166-EC1_4', 'OH-DART_108164-EN1_3', 'OH-DART_108142-EN1_2', 'OH-DART_108120-EN2_2', 'OH-DART_108109-EN1_3', 'OH-DART_108107-EN1_2', 'OH-DART_108049-EN1_2', 'OH-DART_108113-EN1_3', 'OH-DART_108046-EN2_8', 'OH-DART_108126-EN1_4', 'OH-DART_30807-KN1_7', 'OH-DART_30785-KN1_5', 'OH-DART_30904-KN2_5', 'SPARK_194_C1_Tromso_3', 'SPARK_194_C2_3', 'OH-DART_30785-KC1_2', 'OH-DART_30788-KC1_2', 'OH-DART_30788-KN1_2', 'OH-DART_30695-KN1_3', 'OH-DART_30692-KN1_2', 'OH-DART_30505-EC1_4', 'OH-DART_30333-EC1_2', 'OH-DART_30089-KN1_4', 'OH-DART_25110-EC1_4', 'OH-DART_20981-KN1_4', 'SPARK_2668_C1_4', 'OH-DART_30624-KN1_2', 'OH-DART_30452-EN1_2', 'OH-DART_30452-KN1_2', 'OH-DART_30092-KN2_4', 'OH-DART_30092-KC1_2', 'OH-DART_30093-KC1_2', 'OH-DART_30649-KN1_3', 'OH-DART_30763-KN1_2', 'OH-DART_30765-KN1_3', 'OH-DART_30769-KN1_2', 'OH-DART_30843-KN1_2', 'OH-DART_30005-KC1_2', 'OH-DART_108321-KN1_2', 'OH-DART_108305-EN1_2', 'OH-DART_108172-EN1_4', 'OH-DART_108169-EN2_2', 'OH-DART_108163-EN2_3', 'OH-DART_108163-EN1_2', 'OH-DART_108162-EN1_3', 'OH-DART_108142-EN2_2', 'OH-DART_108143-KN1_2', 'OH-DART_108133-EN1_3', 'OH-DART_108127-EN2_2', 'OH-DART_108126-EN1_2', 'OH-DART_108116-EN1_3', 'OH-DART_108114-EN1_2', 'OH-DART_108110-EN2_2', 'OH-DART_108109-EN2_2', 'OH-DART_108107-EN2_3', 'OH-DART_108107-EN1_3', 'OH-DART_108127-EN1_2', 'OH-DART_108150-EN1_2', 'OH-DART_20166-EC1_2', 'OH-DART_30615-KN1_5', 'OH-DART_30082-EC1_3', 'OH-DART_108072-KN1_3', 'OH-DART_108139-KN1_2', 'OH-DART_108068-EN1_2', 'OH-DART_108069-EN1_2', 'OH-DART_108053-EN1_2', 'OH-DART_108067-EN2_3', 'OH-DART_108046-EN2_5', 'OH-DART_108106-EN2_2', 'OH-DART_108046-EN2_2', 'OH-DART_108046-EN1_4', 'OH-DART_108044-EN2_3', 'OH-DART_108105-EN1_4', 'OH-DART_108044-EN1_2', 'OH-DART_108044-EN2_2', 'OH-DART_108042-EN2_3', 'OH-DART_108042-EN1_5', 'OH-DART_30333-EC1_4', 'OH-DART_108042-EN1_4', 'OH-DART_108042-EN1_3', 'OH-DART_108042-EN1_2', 'OH-DART_108051-EN1_2', 'OH-DART_108040-EN1_5', 'OH-DART_108040-EN1_4', 'OH-DART_108040-EN1_3', 'OH-DART_108040-EN1_2', 'OH-DART_108038-KN1_7', 'OH-DART_30151-KN1_6', 'OH-DART_30452-EN1_9', 'OH-DART_30646-KN1_8', 'OH-DART_30783-KN1_8', 'OH-DART_30804-KN1_7', 'OH-DART_30805-KN1_7', 'OH-DART_30821-KN2_6', 'OH-DART_30841-KN1_6', 'OH-DART_30904-KN2_7', 'OH-DART_108038-KN1_6', 'OH-DART_30005-KC1_4', 'OH-DART_30627-KN1_4', 'OH-DART_30692-KN1_5', 'OH-DART_30714-KN1_6', 'OH-DART_30764-KN1_5', 'OH-DART_30785-KN1_6', 'OH-DART_30843-KN1_4', 'OH-DART_30902-KN1_6', 'OH-DART_30904-KN2_6', 'OH-DART_108053-KC1_9', 'OH-DART_108053-KN1_4', 'OH-DART_108054-KN1_4', 'OH-DART_108073-KC1_5', 'OH-DART_108073-KN1_5', 'OH-DART_25927-KC1_5', 'OH-DART_25927-KN1_5', 'OH-DART_25928-KN1_5', 'SPARK_1014_C2_4', 'SPARK_1048_C1_4', 'SPARK_1080_C1_5', 'SPARK_1160_C1_4', 'SPARK_1179_C1_5', 'SPARK_1464_C1_4', 'SPARK_1771_C1_4', 'SPARK_1922_C1_Tromso_14', 'SPARK_1924_C1_7', 'SPARK_194_C1_Tromso_4', 'SPARK_194_C2_4', 'SPARK_201_C1_4', 'SPARK_201_C2_5', 'SPARK_212_C1_Tromso_4', 'SPARK_195_C1_6', 'SPARK_195_C2_6', 'SPARK_198_C1_4', 'SPARK_207_C1_4', 'SPARK_197_C1_repeat_4', 'SPARK_200_C1_4', 'SPARK_203_C1_4', 'SPARK_204_C1_4', 'SPARK_205_C1_4', 'SPARK_206_C1_5', 'SPARK_210_C1_Tromso_4', 'SPARK_214_C1_4', 'SPARK_1188_C1_4', 'OH-DART_30089-KN1_5', 'OH-DART_30092-KN2_10', 'OH-DART_30452-EN1_7', 'OH-DART_30452-KN1_5', 'OH-DART_30646-KN1_7', 'OH-DART_30695-KN1_6', 'OH-DART_30763-KN1_5', 'OH-DART_30765-KN1_6', 'OH-DART_30783-KN1_7', 'OH-DART_30786-KN1_6', 'OH-DART_30804-KN1_6', 'OH-DART_30821-KN2_5', 'OH-DART_30823-KN1_5', 'OH-DART_30841-KN1_5', 'OH-DART_108038-KN1_3', 'OH-DART_30151-KN1_3', 'OH-DART_30646-KN1_6', 'OH-DART_30786-KN1_4', 'OH-DART_30804-KN1_4', 'OH-DART_30805-KN1_5', 'OH-DART_30821-KN2_4', 'OH-DART_30841-KN1_2', 'OH-DART_30823-KN1_2', 'OH-DART_108038-KN1_2', 'OH-DART_108037-EN1_5', 'OH-DART_30452-EN1_11', 'OH-DART_30452-KN1_7', 'SPARK_1871_C1_4', 'SPARK_1871_C2_7', 'SPARK_1923_C1_4', 'OH-DART_108037-EN1_3', 'OH-DART_108102-EN2_6', 'OH-DART_108109-EN2_4', 'OH-DART_108145-EN1_6', 'OH-DART_108037-EN1_2', 'OH-DART_108035-KN1_8', 'SPARK_156_C1_2', 'OH-DART_108035-KN1_7', 'OH-DART_108035-KN1_6', 'OH-DART_30450-KN2_9', 'OH-DART_108035-KN1_5', 'OH-DART_108035-KN1_2', 'OH-DART_108032-EN1_7', 'OH-DART_108032-EN1_3', 'OH-DART_108031-KN1_6', 'OH-DART_108031-KN1_5', 'OH-DART_108066-KN1_4', 'OH-DART_108031-KN1_4', 'OH-DART_108031-KN1_3', 'SPARK_1106_C1_5', 'SPARK_1153_C2_4', 'SPARK_1259_C1_4', 'SPARK_1502_C1_4', 'SPARK_1884_C1_5', 'SPARK_357_C1_4', 'SPARK_699_C1_4', 'SPARK_923_C1_3', 'SPARK_980_C1_3', 'SPARK_989_C1_3', 'OH-DART_108031-KN1_2', 'OH-DART_108029-EN1_2', 'OH-DART_108026-EN1_6', 'OH-DART_108026-EN1_5', 'OH-DART_108102-EN2_4', 'OH-DART_108026-EN1_4', 'OH-DART_108042-EN2_2', 'OH-DART_108026-EN1_3', 'OH-DART_108026-EN1_2', 'OH-DART_108024-EN1_5', 'OH-DART_108055-EN1_5', 'OH-DART_108142-EN1_6', 'OH-DART_108024-EN1_4', 'OH-DART_108024-EN1_3', 'OH-DART_108122-EN1_2', 'OH-DART_108110-EN1_2', 'OH-DART_108112-EN1_2', 'OH-DART_108116-EN1_2', 'OH-DART_108148-EN1_2', 'OH-DART_108024-EN1_2', 'OH-DART_108020-EN1_5', 'OH-DART_108026-EN1_7', 'OH-DART_108019-EN1_4', 'OH-DART_108067-EN1_9', 'OH-DART_108115-EN2_10', 'OH-DART_108118-EN1_10', 'OH-DART_108019-EN1_2', 'OH-DART_108018-EN2_7', 'OH-DART_108018-EN2_5', 'OH-DART_108026-EN1_9', 'OH-DART_108061-EN1_3', 'OH-DART_108067-EN1_6', 'OH-DART_108104-EN1_11', 'OH-DART_108105-EN1_8', 'OH-DART_108116-EN1_6', 'OH-DART_108126-EN1_5', 'OH-DART_108142-EN2_7', 'OH-DART_108143-KN1_7', 'OH-DART_108169-EN1_5', 'OH-DART_108169-EN2_4', 'OH-DART_108018-EN2_4', 'OH-DART_108018-EN2_3', 'OH-DART_108018-EN2_2', 'OH-DART_108018-EN1_5', 'OH-DART_108145-EN1_5', 'OH-DART_108018-EN1_3', 'OH-DART_108018-EN1_2', 'OH-DART_108017-EN1_5', 'SPARK_1861_C1_5', 'SPARK_1863_C1_DNA_5', 'SPARK_1864_C1_6', 'SPARK_1866_C1_7', 'SPARK_974_C1_4', 'OH-DART_108116-EN1_5', 'OH-DART_108045-EN1_4', 'OH-DART_108102-KN1_5', 'OH-DART_108032-EN1_5', 'OH-DART_108017-EN1_2', 'OH-DART_108014-EN1_8', 'SPARK_2225_C1_11', 'OH-DART_108014-EN1_6', 'OH-DART_108045-EN1_5', 'OH-DART_108102-KN1_6', 'OH-DART_108162-EN1_7', 'OH-DART_108168-EN1_7', 'OH-DART_30469-KC1_6', 'OH-DART_30470-KC1_6', 'OH-DART_30904-KN2_8', 'OH-DART_108014-EN1_5', 'OH-DART_108026-EN1_8', 'OH-DART_108055-EN1_2', 'OH-DART_108102-KN1_3', 'OH-DART_108110-EN1_5', 'OH-DART_108112-EN1_3', 'OH-DART_108116-EN1_4', 'OH-DART_108148-EN1_4', 'OH-DART_108168-EN2_3', 'OH-DART_108172-EN1_5', 'OH-DART_30082-EC1_4', 'OH-DART_108012-EN1_6', 'OH-DART_108012-EN1_2', 'OH-DART_108066-KN1_2', 'OH-DART_108009-EN1_2', 'OH-DART_108008-EN1_9', 'OH-DART_108037-EN1_4', 'OH-DART_108107-EN2_4', 'OH-DART_108133-EN1_5', 'OH-DART_108145-EN1_7', 'OH-DART_108169-EN2_5', 'OH-DART_30089-KN1_6', 'OH-DART_30092-KC1_8', 'OH-DART_30093-KC1_8', 'OH-DART_30764-KN1_8', 'OH-DART_108008-EN1_5', 'OH-DART_108019-EN1_3', 'OH-DART_108045-EN1_3', 'OH-DART_108046-EN1_3', 'OH-DART_108046-EN2_7', 'OH-DART_108053-EN1_5', 'OH-DART_108102-KN1_4', 'OH-DART_108104-EN1_7', 'OH-DART_108162-EN1_6', 'OH-DART_108168-EN1_4', 'OH-DART_108169-EN1_4', 'OH-DART_108113-EN2_6', 'OH-DART_108008-EN1_4', 'OH-DART_108008-EN1_2', 'OH-DART_108008-EN1_10', 'OH-DART_108069-EN1_3', 'OH-DART_108110-EN2_5', 'OH-DART_108162-EN1_11', 'OH-DART_108168-EN2_9', 'OH-DART_108168-EN1_6', 'OH-DART_108075-EN1_11', 'OH-DART_108007-EN1_2', 'OH-DART_108006-KN1_10', 'OH-DART_108006-EN1_5', 'OH-DART_108017-EN1_4', 'OH-DART_25110-EC1_10', 'OH-DART_108006-EN1_4', 'OH-DART_108006-EN1_3', 'OH-DART_108168-EN2_2', 'OH-DART_108014-EN1_3', 'OH-DART_108006-EN1_2', 'OH-DART_108005-KC1_4', 'OH-DART_108005-KN1_3', 'OH-DART_108005-KC1_2', 'OH-DART_108005-KN1_2', 'OH-DART_108005-EN1_8', 'OH-DART_108008-EN1_8', 'OH-DART_108005-EN1_7', 'OH-DART_108020-EN1_7', 'OH-DART_108115-EN2_5', 'OH-DART_108118-EN1_6', 'OH-DART_108161-EN1_7', 'OH-DART_108168-EN1_9', 'OH-DART_108172-EN1_8', 'OH-DART_108005-EN1_5', 'OH-DART_108005-EN1_4', 'OH-DART_108005-EN1_3', 'OH-DART_108005-KC1_3', 'OH-DART_108306-EN1_2', 'OH-DART_108102-EN2_2', 'OH-DART_108005-EN1_2', 'OH-DART_108003-EN1_6', 'OH-DART_108014-EN1_9', 'OH-DART_108018-EN2_6', 'OH-DART_108020-EN1_8', 'OH-DART_108026-EN1_10', 'OH-DART_108055-EN1_6', 'OH-DART_108067-EN1_8', 'OH-DART_108102-KN1_8', 'OH-DART_108104-EN1_12', 'OH-DART_108109-EC1_9', 'OH-DART_108169-EN1_7', 'OH-DART_21439-EC1_9', 'OH-DART_30082-EC1_6', 'OH-DART_30225-EC1_9', 'OH-DART_30226-EC1_10', 'OH-DART_30469-KC1_8', 'OH-DART_30470-KC1_8', 'OH-DART_108003-EN1_5', 'OH-DART_108003-EN1_4', 'OH-DART_108005-EN1_6', 'OH-DART_108020-EN1_6', 'OH-DART_108032-EN1_6', 'OH-DART_108064-EN1_6', 'OH-DART_108067-EN1_5', 'OH-DART_108075-EN1_9', 'OH-DART_108104-EN1_9', 'OH-DART_108105-EN1_6', 'OH-DART_108115-EN2_4', 'OH-DART_108118-EN1_5', 'OH-DART_108003-EN1_3', 'OH-DART_108020-EN1_3', 'OH-DART_108003-EN1_2', 'OH-DART_108020-EN1_2', 'OH-DART_108002-KN1_5', 'OH-DART_108002-KN1_4', 'OH-DART_108002-KN1_3', 'OH-DART_108103-EN1_2', 'OH-DART_10175-EN1_6', 'OH-DART_108032-EN1_8', 'OH-DART_108109-EC1_7', 'OH-DART_108127-EN2_5', 'OH-DART_21439-EC1_7', 'OH-DART_30225-EC1_7', 'OH-DART_30226-EC1_8', 'OH-DART_30695-KN1_9', 'OH-DART_20166-EC1_5', 'OH-DART_108109-EN1_9', 'OH-DART_108018-EN1_4', 'OH-DART_10175-EN1_5', 'SPARK_974_C1_5', 'OH-DART_10175-EN1_4', 'OH-DART_25110-EC1_8', 'OH-DART_30092-KC1_3', 'OH-DART_30093-KC1_3', 'OH-DART_30469-KC1_5', 'OH-DART_30470-KC1_5', 'OH-DART_30505-EC1_8', 'OH-DART_30788-KN1_4', 'OH-DART_30804-EC1_7', 'OH-DART_10175-EN1_2', 'OH-DART_10170-EC1_99', 'OH-DART_108067-EN2_8', 'OH-DART_108106-EN1_4', 'OH-DART_108120-EN1_3', 'OH-DART_108120-EN2_3', 'OH-DART_108127-EN2_3', 'OH-DART_108141-EN1_4', 'OH-DART_108145-EN1_4', 'OH-DART_108148-EC1_4', 'OH-DART_108168-EN1_5', 'OH-DART_108305-EN1_4', 'OH-DART_25110-EC1_9', 'OH-DART_30226-EC1_4', 'OH-DART_10170-EC1_124', 'OH-DART_108045-EN1_6', 'OH-DART_108075-EN1_16', 'OH-DART_108104-EN1_13', 'OH-DART_108142-EN2_8', 'OH-DART_108143-KN1_8', 'OH-DART_108162-EN1_10', 'OH-DART_108163-EN2_11', 'OH-DART_108164-EN1_6', 'OH-DART_30450-KN2_14', 'OH-DART_30765-KN1_8', 'OH-DART_30804-KN1_10', 'OH-DART_30805-KN1_10', 'OH-DART_30821-KN2_10', 'OH-DART_30823-KN1_10', 'OH-DART_30841-KN1_10', 'SPARK_1144_C2_11', 'SPARK_1861_C1_6', 'SPARK_1863_C1_DNA_6', 'SPARK_1864_C1_7', 'SPARK_1865_C1_5', 'SPARK_1866_C1_8', 'OH-DART_10170-EC1_116', 'OH-DART_10170-EC1_103', 'OH-DART_108053-KC1_8', 'OH-DART_30646-KN1_4', 'OH-DART_30765-KN1_5', 'OH-DART_30783-KN1_5', 'OH-DART_30785-KC1_3', 'OH-DART_30805-KN1_6', 'OH-DART_30823-KN1_4', 'OH-DART_30841-KN1_4', 'SPARK_1736_C1_4', 'SPARK_1819_C1_4', 'SPARK_1859_C1_Tromso_6', 'SPARK_1860_C1_7', 'SPARK_1862_C1_Tromso_5', 'SPARK_1914_C1_repeat_5', 'SPARK_1917_C1_5', 'SPARK_1920_C1_5', 'SPARK_1924_C1_6', 'SPARK_2530_C2_3', 'OH-DART_30450-KN2_3', 'OH-DART_30902-KN1_2', 'SPARK_1859_C1_Tromso_3', 'SPARK_1860_C1_4', 'SPARK_1862_C1_Tromso_2', 'SPARK_1914_C1_repeat_2', 'SPARK_1917_C1_2', 'SPARK_1920_C1_2', 'SPARK_1925_C1_3', 'SPARK_195_C1_2', 'SPARK_195_C2_2', 'SPARK_2530_C2_2', 'SPARK_699_C1_2'] not in index"

Any idea why this is happening? Thanks in advance, Natacha

natachacouto commented 1 year ago

I've fixed the problem. I had some issues with the names of the contigs in the fasta file.

Sami482005 commented 17 hours ago

I've fixed the problem. I had some issues with the names of the contigs in the fasta file.

I actually have the same problem. I do not have an error in the file names, but it keeps giving me the same error. Could you please tell me how you fixed it, what the error was in your case, and what I should look out for? Did the tool work and was it useful?

If possible, please send me an email to sami.saliby@lau.edu with you response. Thanks!