michaellee1 / CellSeg

MIT License
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Cannot run CellSeg due to lack of pretrained model #37

Closed JoeBlackSci closed 2 years ago

JoeBlackSci commented 2 years ago

Hi, I'm attempting to use cellseg however when following the tutorial: https://michaellee1.github.io/CellSegSite/cellseg_tutorial.html. The main function fails and provides the error:

OSError: Unable to open file (unable to open file: name = '/Cellseg/CellSeg-master/src/modelFiles/final_weights.h5', errno = 2, error message = 'No such file or directory', flags = 0, o_flags = 0)

When looking at the repo it appears that the modelFiles directory is empty. Can I ask if this is intentional or if you plan on making the pre-trained model available?

Edit: My mistake, the model is available here: https://drive.google.com/file/d/1RgfejHUj2W8WbD7_zhi5t3MXTYvTdlnh/view For anyone else that missed it.