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michaelschaub / PartitionStability

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Request for partition stability code for proteins #3

Closed rakeshr10 closed 8 years ago

rakeshr10 commented 8 years ago

Hi,

Can you share the partition stability code for proteins which was published in Physical biology as well as in Molecular Biosystems.

Regards Rakesh

michaelschaub commented 8 years ago

Dear Rakesh,

I am not sure I understand your request. The repository contains the code for Partition Stability. Or are you referring to another part of the analysis in the publications you mention? Feel free to send me an Email.

Michael

On 08/12/15 19:31, Rakesh Ramachandran wrote:

Hi,

Can you share the partition stability code for proteins which was published in Physical biology as well as in Molecular Biosystems.

Regards Rakesh

— Reply to this email directly or view it on GitHub https://github.com/michaelschaub/PartitionStability/issues/3.

rakeshr10 commented 8 years ago

Hi,

Yes I am looking for the set of codes or examples for the analysis which have been performed in the publications for proteins like the allosteric pathways in caspase-1 or the adenylate kinase etc. Specifically the Markov stability in the atomistic graph representation of proteins.

Regards Rakesh

michaelschaub commented 8 years ago

As for the Markov Stability part, the graph of adenylate kinase is included in the demo folder, as you have surely seen.

How to construct the graph from a protein, however, is a different matter that is distinct from this and not covered within this repository. I suggest you get in contact with the authors from the respective papers (my former colleagues at Imperial).

cheers,

Michael

On 08/12/15 21:49, Rakesh Ramachandran wrote:

Hi,

Yes I am looking for the set of codes or examples for the analysis which have been performed in the publications for proteins like the allosteric pathways in caspase-1 or the adenylate kinase etc. Specifically the Markov stability in the atomistic graph representation of proteins.

Regards Rakesh

— Reply to this email directly or view it on GitHub https://github.com/michaelschaub/PartitionStability/issues/3#issuecomment-163013684.

rakeshr10 commented 8 years ago

Thanks for the information. I will contact the respective authors.

Regards Rakesh