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michstrauch / TopHRU

Threshold optimization for HRUs in SWAT
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Error installing: "there is no package called 'scales' #3

Open chrisschuerz opened 7 years ago

chrisschuerz commented 7 years ago

Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) : there is no package called 'scales' ERROR: lazy loading failed for package 'topHRU'

michstrauch commented 7 years ago

Just tried to install topHRU on of our model servers using R version 3.2.3. Find below the installation history (error message at the end) ...

install.packages("devtools") Installing package into ‘C:/Users/mstrauch/Documents/R/win-library/3.2’ (as ‘lib’ is unspecified) also installing the dependencies ‘memoise’, ‘whisker’, ‘rstudioapi’, ‘git2r’, ‘withr’

trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/memoise_1.0.0.zip' Content type 'application/zip' length 23315 bytes (22 KB) downloaded 22 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/whisker_0.3-2.zip' Content type 'application/zip' length 64656 bytes (63 KB) downloaded 63 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/rstudioapi_0.6.zip' Content type 'application/zip' length 50811 bytes (49 KB) downloaded 49 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/git2r_0.18.0.zip' Content type 'application/zip' length 2984396 bytes (2.8 MB) downloaded 2.8 MB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/withr_1.0.2.zip' Content type 'application/zip' length 42278 bytes (41 KB) downloaded 41 KB

trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/devtools_1.12.0.zip' Content type 'application/zip' length 432899 bytes (422 KB) downloaded 422 KB

package ‘memoise’ successfully unpacked and MD5 sums checked package ‘whisker’ successfully unpacked and MD5 sums checked package ‘rstudioapi’ successfully unpacked and MD5 sums checked package ‘git2r’ successfully unpacked and MD5 sums checked package ‘withr’ successfully unpacked and MD5 sums checked package ‘devtools’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\mstrauch\AppData\Local\Temp\47\RtmpUJBLSS\downloaded_packages

devtools::install_github("michstrauch/TopHRU", dependencies = TRUE) Downloading GitHub repo michstrauch/TopHRU@master from URL https://api.github.com/repos/michstrauch/TopHRU/zipball/master Installing topHRU Installing 1 package: abind Installing package into ‘C:/Users/mstrauch/Documents/R/win-library/3.2’ (as ‘lib’ is unspecified) trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/abind_1.4-5.zip' Content type 'application/zip' length 40002 bytes (39 KB) downloaded 39 KB

package ‘abind’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\mstrauch\AppData\Local\Temp\47\RtmpUJBLSS\downloaded_packages Installing 1 package: emoa Installing package into ‘C:/Users/mstrauch/Documents/R/win-library/3.2’ (as ‘lib’ is unspecified) trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/emoa_0.5-0.zip' Content type 'application/zip' length 171105 bytes (167 KB) downloaded 167 KB

package ‘emoa’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\mstrauch\AppData\Local\Temp\47\RtmpUJBLSS\downloaded_packages Installing 1 package: ggplot2 Installing package into ‘C:/Users/mstrauch/Documents/R/win-library/3.2’ (as ‘lib’ is unspecified) trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/ggplot2_2.2.1.zip' Content type 'application/zip' length 2761235 bytes (2.6 MB) downloaded 2.6 MB

package ‘ggplot2’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\mstrauch\AppData\Local\Temp\47\RtmpUJBLSS\downloaded_packages Installing 1 package: plotly Installing package into ‘C:/Users/mstrauch/Documents/R/win-library/3.2’ (as ‘lib’ is unspecified) trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.2/plotly_4.5.6.zip' Content type 'application/zip' length 817555 bytes (798 KB) downloaded 798 KB

package ‘plotly’ successfully unpacked and MD5 sums checked

The downloaded binary packages are in C:\Users\mstrauch\AppData\Local\Temp\47\RtmpUJBLSS\downloaded_packages "C:/PROGRA~1/R/R-32~1.3/bin/x64/R" --no-site-file --no-environ --no-save --no-restore --quiet CMD INSTALL \ "C:/Users/mstrauch/AppData/Local/Temp/47/RtmpUJBLSS/devtools7e6c636d207/michstrauch-TopHRU-aa9f099" \ --library="C:/Users/mstrauch/Documents/R/win-library/3.2" --install-tests

michstrauch commented 7 years ago

In this case, the issue could be solved by manually installing the following packages...

install.packages("scales") install.packages("base64enc") install.packages("viridisLite")

michstrauch commented 7 years ago

However, I remember other cases, where I also had to install...

install.packages("dplyr") install.packages("gtable") install.packages("htmlwidgets") install.packages("purrr") install.packages("tidyr")

chrisschuerz commented 7 years ago

it seems that devtools::install_github("path/to/repository", dependencies = TRUE) does not consider all recursive dependencies of the dependencies. Therefore, a workaround is now given in the readme and all the dependencies are simply installed prior to the topHRU installation

michstrauch commented 7 years ago

The workaround helps partly but still causes an error. Now the problem is related to plotly. Installing it from CRAN leads to incorrect installation of its dependencies (a number of packages is missing). Installation of plotly from github seems to work when "miniUI" is added to the list of required CRAN packages.

michstrauch commented 7 years ago

Unfortunately now another package is missing (yaml). The error popped up when applying the plot_pareto function.

CurkM commented 6 years ago

Do I understand correctly that this calculator is not operational at the moment due to some packages in R being missing? Sorry, I'm a complete noob when it comes to programming but the instructions seemed easy enough that I want to try it out.