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micom-dev / micom

Python package to study microbial communities using metabolic modeling.
https://micom-dev.github.io/micom
Apache License 2.0
82 stars 17 forks source link

Add basic installation instructions for QP solvers to the docs #13

Closed jfoldi81 closed 3 years ago

jfoldi81 commented 3 years ago

I'm trying to run com.cooperative_tradeoff on a community using some sbml files but cannot because I'm using the default GLPK and don't know how to use IBM Cplex instead. I downloaded it as an academic edition but do not know how to set it as the solver for micom. Thanks in advance!

cdiener commented 3 years ago

The following section from the q2-micom docs may be helpful: https://micom-dev.github.io/q2-micom/#install-a-qp-solver .

jfoldi81 commented 3 years ago

Thank you so much! I hadn't seen that page before and now have it working.

cdiener commented 3 years ago

Awesome. I'll add those instructions to the micom docs as well.

cdiener commented 3 years ago

closing in favour of #43