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microDM / MicFunPred

A conserved approach to predict functional profiles from 16S rRNA sequence data
MIT License
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error while running MicFunPred #12

Open anitatiknaik opened 2 years ago

anitatiknaik commented 2 years ago

Running BLAST with 98.3 cut-off. Traceback (most recent call last): File "/usr/local/bin/MicFunPred_run_pipeline.py", line 102, in fp.blast(os.path.join(os.getcwd(),in_repSet), blastDbPath, in_numCores, cwd) File "/usr/local/lib/python2.7/site-packages/micfunpreDefinitions/micfunpreDefinitions.py", line 41, in blast subBlast = subprocess.Popen(cmd,stdin=subprocess.PIPE,stderr=subprocess.PIPE,shell=True) UnboundLocalError: local variable 'cmd' referenced before assignment

microDM commented 2 years ago

Can you try now? Which system you are using?