Open Alishumali opened 5 years ago
Sorry i didn't include the error output. the command : prev <- pime.prevalence(per_variable_obj) the error: Error in FUN(X[[i]], ...) : one tree has a different number of tips
I'm having a similar issue. When I run the command prevalences=pime.prevalence(per_variable_obj)
, I get the same error. However, removing the tree allows the command to run. What exactly is happening here?
Hi, PIME has been an amazing addition to the microbiome analysis tools I use, thank you for putting it together. I tried using PIME with a phyloseq object that has a tree attached and it doesn't allow it but when I remove the tree it runs well. I must've missed something in your tutorial, appreciate your help.
cheers, Alishum