issues
search
microPIECE-team
/
microPIECE
microPIECE (microRNA pipeline enhanced by CLIP experiments)
GNU General Public License v2.0
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Add zenodo link for release v1.5.2
#187
greatfireball
closed
6 years ago
1
Add zenodo link for release v1.5.2
#186
greatfireball
closed
6 years ago
1
Correct copying of final files
#185
greatfireball
closed
6 years ago
1
Copying of output files only if overwrite is specified
#184
greatfireball
closed
6 years ago
0
Pre release v1.5.2
#183
greatfireball
closed
6 years ago
1
Pre release v1.5.2
#182
greatfireball
closed
6 years ago
2
Use https instead of ssh for testset cloning
#181
greatfireball
closed
6 years ago
1
Update test set cloning to use https
#180
greatfireball
closed
6 years ago
0
Multithreaded piranha runs and default bin size 30
#179
greatfireball
closed
6 years ago
1
Increase default bin size to 30
#178
greatfireball
closed
6 years ago
0
Support multithreading for Piranha runs
#177
greatfireball
closed
6 years ago
0
updated numbers of tarpred
#176
DanielAmsel
closed
6 years ago
1
Reduced memory footprint for CLIP_merge_bed_files.pl
#175
greatfireball
closed
6 years ago
1
CLIP_merge_bed_files.pl requires huge amounts of memory
#174
greatfireball
closed
6 years ago
0
Replaces ssh install by https
#173
greatfireball
closed
6 years ago
1
Update numbers for target prediction
#172
greatfireball
closed
6 years ago
2
Use https link instead of git@github.com
#171
greatfireball
closed
6 years ago
0
Preparation v1.5.1
#170
greatfireball
closed
6 years ago
1
Preparation v1.5.1
#169
greatfireball
closed
6 years ago
2
ORCID André
#168
greatfireball
closed
6 years ago
1
Add ORCID for André
#167
greatfireball
closed
6 years ago
0
Optimized progress bars for pre binning step
#166
greatfireball
closed
6 years ago
1
changed the version numbers in the readme installation description from 1.4.0 to 1.5.0
#165
greatfireball
closed
6 years ago
1
changed the version numbers in the readme installation description from 1.4.0 to 1.5.0
#164
greatfireball
closed
6 years ago
1
changed version number in install statement
#163
DanielAmsel
closed
6 years ago
2
Testset/mapping
#162
DanielAmsel
closed
6 years ago
1
Testset/mapping
#161
DanielAmsel
closed
6 years ago
2
Bump to version v1.5.0
#160
greatfireball
closed
6 years ago
1
Bump version to v1.5.0
#159
greatfireball
closed
6 years ago
1
Add pre-binning feature
#158
greatfireball
closed
6 years ago
1
Update documentation of CLIP_merge_bed_files.pl
#157
greatfireball
closed
6 years ago
1
Fix documantion of CLIP_merge_bed_files.pl
#156
greatfireball
closed
6 years ago
0
Binning before Piranha with pseudocounts for transcript sites
#155
greatfireball
closed
6 years ago
2
Feature/delete length cutoff during clip transfer
#154
greatfireball
closed
6 years ago
1
Length cutoff not required
#153
greatfireball
closed
6 years ago
0
Commandline options to control length limits
#152
greatfireball
closed
6 years ago
1
Output filename is derived from minlength variable
#151
greatfireball
closed
6 years ago
1
Feature/bedtool discard sizes
#150
greatfireball
closed
6 years ago
1
Paper/patch
#149
DanielAmsel
closed
6 years ago
1
Paper/patch
#148
DanielAmsel
closed
6 years ago
1
Wrong length based on bed coordinates
#147
greatfireball
closed
6 years ago
0
Output filename is hard coded, but should be dynamic
#146
greatfireball
closed
6 years ago
1
The three limits should be configurable by a command line parameter
#145
greatfireball
closed
6 years ago
1
Update documentation to use v1.4.0 instead of v1.3.0
#144
greatfireball
closed
6 years ago
1
Update documentation to use v1.4.0 instead of v1.3.0
#143
greatfireball
closed
6 years ago
1
Bump to Release v1.4.0
#142
greatfireball
closed
6 years ago
1
Bump to Release v1.4.0
#141
greatfireball
closed
6 years ago
1
Pseudo mirbase dat will be copied into output folder
#140
greatfireball
closed
6 years ago
1
Fix accession requirement in mirBASE dat file parser
#139
greatfireball
closed
6 years ago
1
Correction of RNA::HairpinFigure output to ensure correct sequence in figure
#138
greatfireball
closed
6 years ago
1
Next