Panfeed second pass should not do compression

microbial-pangenomes-lab / microGWAS

Bacterial GWAS analysis

https://microgwas.readthedocs.io

MIT License

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Panfeed second pass should not do compression #1

Closed mgalardini closed 1 year ago

mgalardini commented 1 year ago

For some reason adding --compress to the second pass of panfeed results in a crash when using the helper scripts. This change avoids compressing panfeed's output, and we now make sure to delete them once the second pass is finished.