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microbialphenotypes / OMP-ontology

This repository contains the editors's working copy of OMP and public release files.
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Cryptococcus NTR: cold sensitivity phenotype #102

Open Achchuthan opened 8 years ago

Achchuthan commented 8 years ago

NTR 1) cold sensitivity phenotype Xref: PATO:0000554 " cold sensitive" is_a: OMP:0007158 ! altered stress response phenotype APO cross-refs: id: APO:0000148 name: cold sensitivity namespace: observable alt_id: YPO:0000148 def: "Sensitivity to temperatures that are lower than optimal growth temperature." [SGD:mcc] subset: AspGD subset: CGD subset: CryptoGD subset: SGD is_a: APO:0000092 ! temperature sensitive growth

2) altered cold sensitivity (is_a cold sensitivity phenotype) 3) increased cold sensitivity (is_a altered cold sensitivity) 4) decreased cold sensitivity (is_a altered cold sensitivity) 5) abolished cold sensitivity (is_a decreased cold sensitivity)

dianeoinglis commented 8 years ago

Possibly a OMP:0007158 ! altered stress response phenotype with "heat sensitivity phenotype."

Diane

dianeoinglis commented 8 years ago

Have these terms been created?

2) altered cold sensitivity (is_a cold sensitivity phenotype) 3) increased cold sensitivity (is_a altered cold sensitivity) 4) decreased cold sensitivity (is_a altered cold sensitivity) 5) abolished cold sensitivity (is_a decreased cold sensitivity)

dsiegele commented 7 years ago

Terms were made as children of 'altered resistance to cold'. Still need to add the synonyms for cold sensitivity.

dsiegele commented 7 years ago

See issue #204 for the explanation of why the location of these terms in the ontology has changed.

The OMP terms related to the current NTR for cold sensitivity phenotypes are summarized below.

OMP:0007578 resistance to cold phenotype OMP:0007581 absence of resistance to cold OMP:0007580 presence of resistance to cold OMP:0007582 altered resistance to cold OMP:0007588 decreased resistance to cold OMP:0007587 increased resistance to cold OMP:0007589 abolished resistance to cold

id: OMP:0007581 name: absence of resistance to cold def: "A resistance to cold phenotype where microbes in a population stop growing (and may die) when exposed to a temperature below the optimal growth temperature of the microbe." [OMP:DAS] synonym: "cold sensitive" EXACT [YPO:0000148] synonym: "cold sensitivity" EXACT [APO:0000148] is_a: OMP:0007578 ! resistance to cold phenotype

id: OMP:0007580 name: presence of resistance to cold def: "A resistance to cold phenotype where microbes in a population continue to grow and divide when exposed to a temperature below the optimal growth temperature of the microbe." [OMP:DAS] synonym: "cold resistant" EXACT [] synonym: "resistant to low temperature" EXACT [] is_a: OMP:0007578 ! resistance to cold phenotype

id: OMP:0007582 ! altered resistance to cold name: altered resistance to cold def: "A resistance to cold phenotype where the resistance or sensitivity that microbes in a population show when exposed to a temperature below the optimal growth temperature of the microbe is altered relative to a designated control." [OMP:DAS] synonym: "altered cold sensitivity" EXACT [] synonym: "altered resistance to low temperature" EXACT []

id: OMP:0007587 name: increased resistance to cold def: "An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is increased relative to a designated control." [OMP:DAS] is_a: OMP:0007582 ! altered resistance to cold

id: OMP:0007588 name: decreased resistance to cold def: "An altered resistance to cold phenotype where the resistance of microbes in a population to temperatures below the optimal growth temperature is decreased relative to a designated control." [OMP:DAS] is_a: OMP:0007582 ! altered resistance to cold

id: OMP:0007589 name: abolished resistance to cold def: "A decreased resistance to cold phenotype where the resistance of microbes in a population to temperature below the optimal growth temperature is abolished." [OMP:DAS] is_a: OMP:0007588 ! decreased resistance to cold

dsiegele commented 7 years ago

Need to connect abolished resistance to cold and absence of resistance to cold.