microbialphenotypes / OMP-ontology

This repository contains the editors's working copy of OMP and public release files.
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Need to add additional terms to the 'growth factor requirement' branch #155

Open dsiegele opened 8 years ago

dsiegele commented 8 years ago

We made growth factor requirement terms earlier, but now that Sandy is starting to use them to annotation Pombe phenotypes we can see the need for editing them.

growth factor requirement phenotype ....OMP:0007018 ! does not require growth factor(s)--add synonyms prototoph and prototrophic <-- <-- ..........see below for alternate version

.....requires growth factor(s)-- add synonyms auxotroph and auxotrophic ..........amino acid requirement ..........purine requirement ..........pyrimidine requirement ..........vitamin/enzyme cofactor requirement

.....altered growth factor requirement ..........altered amino acid requirement ...............decreased amino acid requirement ....................abolished amino acid requirement ...............increased amino acid requirement ..........+ altered purine requirement ..........+ altered pyrimidine requirement ..........+ altered vitamin/enzyme cofactor requirement ..........+ decreased growth factor requirement ..........increased growth factor requirement

--> --> I need feedback on OMP:0007018 ! does not require growth factor(s). To be consistent with the true path rule, I think I need to add a term: does not require any growth factor and make prototroph a synonym of this term and not of OMP:0007018

.....does not require growth factor(s) ..........does not require amino acid(s) ..........does not require purine(s) ..........does not require pyrimidine(s) ..........does not require any growth factor; exact synonym is prototroph