Cryptococcus NTR agar invasion phenotype

[dianeoinglis]

Replaces NTR for "invasive growth phenotype" #114. Self-explanatory phenotype except that growth is typically tested under a starvation condition such as low-ammonium or low-glucose.

'agar invasion phenotype' 'altered agar invasion phenotype' 'increased agar invasion phenotype' 'decreased agar invasion phenotype' 'abolished agar invasion phenotype"

[dianeoinglis]

These are great. Please create them.

Thank you! Diane

[dsiegele]

Diane,

I asked Jesus to add the following terms to the ontology. I didn't include specific growth conditions in the definition because those won't be the same for all microbes that can invade agar during growth. Medium composition, temperature, and other experimental conditions can be indicated in the environment field and/or connecting to an ECO term.

I look forward to your comments.

Regards,

Debby

OMP:0005325 agar invasion phenotype: A growth phenotype relating to the ability of a microbe to penetrate agar media during growth.

OMP:0005326 presence of agar invasion: An agar invasion phenotype where a microbe has the ability to penetrate agar media during growth. narrow synonym--APO:0000028: Penetration of cells into a solid substrate during filamentous growth

OMP:0005327 absence of agar invasion: An agar invasion phenotype where a microbe lacks the ability to penetrate agar media during growth.

OMP:0005328 altered agar invasion: An agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is altered relative to a designated control.

OMP:0005329 increased agar invasion: An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is increased relative to a designated control.

OMP:0005330 decreased agar invasion phenotype: An altered agar invasion phenotype where the frequency, rate, timing, or extent of agar invasion is decreased relative to a designated control.

OMP:0005331 abolished agar invasion: A decreased agar invasion phenotype where the ability to invade agar media is abolished.

[Jguzman210]

uploaded to OMP!

[dianeoinglis]

Hi,

Can the OMP IDs be noted in this tracker issue?

Thank you, Diane

[dsiegele]

Hi Diane,

OMP:0005325 agar invasion phenotype .....OMP:0005326 presence of agar invasion .....OMP:0005327 absence of agar invasion .....OMP:0005328 altered agar invasion ..........OMP:0005329 increased agar invasion ..........OMP:0005330 decreased agar invasion ...............OMP:0005331 abolished agar invasion

Sorry for the oversight. I also added the OMP IDs to the earlier post with the definitions.

Debby

[dianeoinglis]

Hi Debby,

These look great. I agree the specific growth conditions do not need to be included in the def as they will be different across species.