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microbialphenotypes / OMP-ontology

This repository contains the editors's working copy of OMP and public release files.
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NTR for OMP terms needed to express FYPO phenotypes in OMP #213

Open dsiegele opened 6 years ago

dsiegele commented 6 years ago

Sandy is mapping FYPO annotations for phenotypes described in a high-throughput genetic analysis of S. pombe to OMP.

Have we decided how to annotate normal terms? These are only a few examples: normal transporter activity normal vegetative cell morphology normal volume spheroid vegetative cell

We will also need new altered phenotype terms that will be broad synonyms of the abnormal phenotype terms in FYPO.

dsiegele commented 6 years ago

new terms made for converting FYPO annotations to OMP annotations: OMP:0007748 cellular physical quality phenotype during vegetative growth OMP:0007750 subcellular component phenotype .....OMP:0007754 cytoseleton phenotype ..........OMP:0007751 altered subcellular component phenotype ...............OMP:0007752 altered cytoskeleton ....................OMP:0007753 altered actin cytoskeleton ..........................OMP:007755 altered actin cytoskeleton during vegetative growth .......................... OMP:0007747 altered actin cytoskeleton morphology during vegetative growth

dsiegele commented 5 years ago

FYPO:0000252 increased spontaneous diploidization (2)

Created OMP:0007940 increased spontaneous diploidization in a vegetative microbial cell Is_a OMP:0007939 increased ploidy in a vegetative microbial cell