NTR: make terms for presence/absence of growth at acid and alkaline pH

[dsiegele]

There are already terms for altered growth at acid and alkaline pH, but need to create terms for the presence and absence of growth for control strains.

[dsiegele]

• omp-edit.obo commit b19c925eb9d20e39b7914a704c1d11cb59b37d28

• Created the following 4 terms:

id: OMP:0007945 name: presence of growth at acidic pH def: "A population growth phenotype where a microbial population is able to grow and reproduce at acidic pH (pH< 7)." [OMP:das] is_a: OMP:0005008 ! pH effect on population growth phenotype created_by: siegele creation_date: 2019-09-12T00:41:29Z

id: OMP:0007946 name: absence of growth at acidic pH def: "A population growth phenotype where a microbial population isn't able to grow and reproduce at acidic pH (pH< 7)." [OMP:das] is_a: OMP:0005008 ! pH effect on population growth phenotype created_by: siegele creation_date: 2019-09-12T00:42:29Z

id: OMP:0007947 name: presence of growth at alkaline pH def: "A population growth phenotype where a microbial population is able to grow and reproduce at alkaline pH (pH>7)." [OMP:das] is_a: OMP:0005008 ! pH effect on population growth phenotype created_by: siegele creation_date: 2019-09-12T10:31:33Z

id: OMP:0007948 realized that this term is redundant with OMOP:0007771, so it was made obsolete in the omp-edit.obo file. name: absence of growth at alkaline pH def: "A population growth phenotype where a microbial population isn't able to grow and reproduce at alkaline pH (pH>7)." [OMP:das] is_a: OMP:0005008 ! pH effect on population growth phenotype created_by: siegele creation_date: 2019-09-12T10:44:32Z

• edited definitions of the following existing terms to make them more consistent with one another OMP:0006116 abolished population growth at acidic pH OMP:0006117 abolished growth at alkaline pH OMP:0007008 decreased population growth at acidic pH OMP:0007009 increased population growth at acidic pH OMP:0007010 decreased population growth at alkaline pH OMP:0007011 increased population growth at alkaline pH OMP:0007138 altered effect of pH on population growth

[dsiegele]

2019-09-13

• realized that there was already a term for presence of population growth at alkaline pH: OMP:0007771, so made OMP:0007947 obsolete
• OMP:0006117 changed term name from 'abolished growth at alkaline pH' to 'abolished population growth at alkaline pH'
• OMP:0007945 changed term name from 'presence of growth at acidic pH' to 'presence of population growth at acidic pH'
• OMP:0007946 changed term name from 'absence of growth at acidic pH' to 'absence of population growth at acidic pH'
• OMP:0007948 changed term name from 'absence of growth at alkaline pH' to 'absence of population growth at alkaline pH'