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microbiome / OMA

Orchestrating Microbiome Analysis
https://microbiome.github.io/OMA
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Beta diversity plot examples #111

Open antagomir opened 2 years ago

antagomir commented 2 years ago

Add an example showing how pairs of points can be connected on beta diversity map.

antagomir commented 1 year ago

Was this done already, I have some memories..?

antagomir commented 6 months ago

@jepasan could you make this as a warm-up? Just suggest one solution first, we can take it from there. Make a PR to OMA beta diversity chapter. At least the "hitchip1006" demo data set from miaTime package has 1000+ individuals, and multiple time points for some of those individuals. So the beta diversity plot (PCoA) can be done for the 1000+ individuals, then connect points with lines for one or more individuals on that map. If unclear, we can chat more in Slack.