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microbiome / OMA

Orchestrating Microbiome Analysis
https://microbiome.github.io/OMA
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Triplot examples for (db)RDA #268

Closed antagomir closed 4 weeks ago

antagomir commented 1 year ago

RDA plots can indicate both features as well as covariates that influence ordination. Would be good to show examples in OMA, too.

Here some examples: https://stackoverflow.com/questions/32194193/plotting-rda-vegan-in-ggplot

Here some discussion on extracting feature scores: https://github.com/vegandevs/vegan/issues/254

antagomir commented 1 year ago

The microViz package contains also nice RDA plot examples. The license is GPL-3 though (hence not directly compatible source code).

antagomir commented 1 year ago

Also check #36

antagomir commented 3 months ago

@RiboRings this seems related to https://github.com/microbiome/mia/issues/541

antagomir commented 1 month ago

@RiboRings is this something we could close?

RiboRings commented 4 weeks ago

Hi! I have no material for this issue right now. If urgent it could be reassigned.

antagomir commented 4 weeks ago

I think we can close this for now but good to have it on record.