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microbiome / OMA

Orchestrating Microbiome Analysis
https://microbiome.github.io/OMA
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Mediation analysis example #475

Open antagomir opened 4 months ago

antagomir commented 4 months ago

Mention in some suitable chapter that also mediation analysis is supported by mia.

Or: exemplify the new mediation functionality in mia with a more detailed example. Avoid duplicating what is already in mia documentation and examples. But if OMA is a good place to explain more about the new method, then perhaps. Consider future maintenance burden for all new content.

Perhaps we should have a new Chapter on "Other methods" or "Advanced techniques", with miscellaneous content that does not make their own dedicated chapter yet?

TuomasBorman commented 1 month ago

This could go under "association" as it's own chapter

antagomir commented 1 month ago

Ok.

TuomasBorman commented 1 month ago

@RiboRings Any chance to implement this?

RiboRings commented 1 month ago

Hey! So are you suggesting to add a new book chapter called Association? What else will it include and how does it relate to mediation analysis?

TuomasBorman commented 1 month ago

See the book, there are lots of changes https://microbiome.github.io/OMA/docs/devel/pages/correlation.html

For instance, similarly to "Correlation" there could be "Mediation"

RiboRings commented 1 month ago

Ok I can work on it once I get past this tight exam period.

TuomasBorman commented 1 month ago

Cool!