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microbiome / benchmarking

Benchmarking miaverse performance
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Switch from hittchip to another data set #12

Closed antagomir closed 2 years ago

antagomir commented 2 years ago

Identify another data to use instead of hitchip1006, and replace. If suitable data is not found, perhaps we can remove hitchip1006 from the data set list.

Ideally all data sets have rowTree so that phylogeny aware methods can be includede in the tests.

All data sets should have N>10000 samples.

RiboRings commented 2 years ago

As reported in this list, the following data sets contain more than 1000 samples:

For the moment, I am going to replace hitchip1006 with AsnicarF_2021. Potentially, we can expand the experiment to more than 3 data sets.

antagomir commented 2 years ago

AsnicarF is ok for now. All of these have the tree as well?

RiboRings commented 2 years ago

Yes, they all contain a rowTree.